Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00423 ATGGATGCGGAGGACTGGGATTTGAGTGCAGAGGACCTCGATTCCCTCGAAAGAGACGCTTTCCAGAAGATTGCTCAACTACGCAACCCTCCTCCTCCTCTTTCTCCACACCAACATCACAATTCTGCAACGGCAACAACGAATCACTTCCCACCAAAACCCCTTCCTAATTCGCTTCCCCAAACTGTTGGTGCTTCGTCTCAAGGAGCAAGAGCATTGCCCACGTCATTGAAATCAGGGACAAACAACGGTGTGCTTACCGTCTCTTGCACCATTTACTTAGTCACCCTTTCTTTTCTCTCTGTAGCAGTCTATCTTTTCTATCTCTTTCTTTTAATTGTTTGTCAGCCATTTCTTATTGGTACATTATGCTCAATGGTCTTTGAAGACAAACAATCCAAAAATGGACTGATAAAGTTTTCAGTTAAATTTTTTCTTCATTCCAGTGGAAATATTGCAGCAAAGTTTCAATATGACCAGGTAGTAATTGCTGCTTTTCGAAAAATCCCTAAATCTTCTTGGAATGCAAAAGAACGGTTATGGGTATTCCCACTGTCTTCCTTGTCAGAGGCGGAGAAGTTTCTTGGAGATGTATCAAGTTATAATGTTCAGGTTGAAAACTTAGATCCCTTAGTGCAACGTGCCATTGCTGCAGCTTCTGTAGTTCCAGATCTTCAAGATCGTTACTGCAAGATCCCTAGTTATATTGAATCAAAGCTATTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTGCAGCATGGGGGACGTGTTCTCTTAGCAGATGAAATGGGACTAGGGAAAACCTTGCAAGCAATTGCTGTAGCTTCATGCATTCAGGAGTCATGGCCTGTTCTCATAATTGCACCATCTTCACTGCGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTAATTGTCTTACCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAACATTGTATCTTCAAGTTCTAAAAACAGCATTCGTTTGAATGGACTATTCAACATCATCTCATATGAGTTGGTGCCAAAGCTGCAGAATTTGCTTACGACATGTGACTTTAAGGTTGTGATTGCTGATGAATCACATTATCTGAAAAATGCTCAAGCAAAGAGGACAACTGCTTCTCTTCCTGTAATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCCCGGCCAATTGAACTATTCAAGCAGCTGGAAGCTTTGTATCCTGATGTATATAAGAATGTTCATGAATATGGTAACCGGTACTGCAAGGGTGGATTTTTTGGACTTTATCAAGGTGCAAGTAACCATGAAGAGTTGCACAATTTGATGAAGGCTACAGTGCTGATTCGCAGGCTTAAAAAAGACGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGACTTGGCTGACAAGGACATGAAGCAAATTAATGCTTTATTTCAAGAGTTGAAAATGGTAAAAGCCAAAATTAAGGATGCTAAATCACAAGAGGAGGCAGAATCACTCAAGTTTACTCAAAAGAATATAATTAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCATCTGTTCTTGATTATCTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGTCAATGCTTGATTCGATACATGAGTTTCTTCGTAAGAAAAAAGTGGGTTGCATACGGATTGATGGAGGTACACCTGCTGCTTCCAGACAGCAATTGGTCACTGAGTTTCAGGAAAAAGATTCTACAAAAGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGCACAGTAATCTTTGCAGAACTGTCTTGGACTCCCGGTGACCTAATTCAGGCTGAAGACCGTGTTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTTGCGAATGACACGGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATCTGGGGCAGATGTTAGACGGTCATGAAAAGGCCTTGGAGGTCTCTGCTACTCTGCCAGAGAGTAGCCCTTCAAAGCAGAAAACTCTGGACCAGTTTATTAGAAGACCTGAAAACGCGGATAGCCCTTCAAAGCAGAAAACTCTGGACCAGTTTATTAGAAAACCTGAAAACTCGGATAGCCCTTCAAAGCAGAAAACGCTAGACCAGTTTTCGGTGCTCAAGGTGGACTACAATTATCGTCCCTTGAGAAGAGGGGCTTCTAAAGCAGGAGGGTGTAGCTTCGCAGCACAGTTTACAACTCTAAACTGTGCAGCTTATGACGAAGGAACTGAACGGTTTTGCAGAATATGCATGGGATGGAATCAAGGTTCTCACAGATTTTAG 2421 0.4159 MDAEDWDLSAEDLDSLERDAFQKIAQLRNPPPPLSPHQHHNSATATTNHFPPKPLPNSLPQTVGASSQGARALPTSLKSGTNNGVLTVSCTIYLVTLSFLSVAVYLFYLFLLIVCQPFLIGTLCSMVFEDKQSKNGLIKFSVKFFLHSSGNIAAKFQYDQVVIAAFRKIPKSSWNAKERLWVFPLSSLSEAEKFLGDVSSYNVQVENLDPLVQRAIAAASVVPDLQDRYCKIPSYIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCIQESWPVLIIAPSSLRLQWASMIQQWLNIPSSDILIVLPQSGGSNRGGFNIVSSSSKNSIRLNGLFNIISYELVPKLQNLLTTCDFKVVIADESHYLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGFFGLYQGASNHEELHNLMKATVLIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALFQELKMVKAKIKDAKSQEEAESLKFTQKNIINKIYTDSAEAKIPSVLDYLGTVIEAGCKFLIFAHHQSMLDSIHEFLRKKKVGCIRIDGGTPAASRQQLVTEFQEKDSTKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHEKALEVSATLPESSPSKQKTLDQFIRRPENADSPSKQKTLDQFIRKPENSDSPSKQKTLDQFSVLKVDYNYRPLRRGASKAGGCSFAAQFTTLNCAAYDEGTERFCRICMGWNQGSHRF 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00423 806 SMART ultradead3 236 429 IPR014001 -
Vian1g00423 806 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 541 692 IPR001650 -
Vian1g00423 806 CDD DEXHc_HARP_SMARCAL1 240 463 - -
Vian1g00423 806 Pfam Helicase conserved C-terminal domain 545 649 IPR001650 -
Vian1g00423 806 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 745 - -
Vian1g00423 806 CDD SF2_C_SNF 536 660 - -
Vian1g00423 806 Gene3D - 213 469 IPR038718 -
Vian1g00423 806 MobiDBLite consensus disorder prediction 38 52 - -
Vian1g00423 806 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 249 421 IPR014001 -
Vian1g00423 806 MobiDBLite consensus disorder prediction 714 740 - -
Vian1g00423 806 FunFam Chromatin remodeling factor18 213 487 - -
Vian1g00423 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 463 IPR027417 -
Vian1g00423 806 Pfam SNF2-related domain 258 519 IPR000330 GO:0005524|GO:0140658
Vian1g00423 806 SMART helicmild6 566 649 IPR001650 -
Vian1g00423 806 Coils Coil 492 512 - -
Vian1g00423 806 MobiDBLite consensus disorder prediction 714 744 - -
Vian1g00423 806 MobiDBLite consensus disorder prediction 27 65 - -
Vian1g00423 806 FunFam Chromatin remodeling factor18 498 720 - -
Vian1g00423 806 Gene3D - 483 751 IPR027417 -
Vian1g00423 806 ProSiteProfiles HARP domain profile. 134 210 IPR010003 -
Vian1g00423 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 691 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00423 Vian-Chr1 3897583 3908546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00423 508 669 RAD5 or RAD16-like Gene Family AT1G05120 31.138 2.88e-18 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian1g00423 SNF2_N 2.3e-27 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00423 K14440 - gmx:100778246 1177.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00423 1 3897583 3908546 Vian1g00423 1 3897583 3908546 ECH