Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00420 ATGGCAAGGCAGCAAGGTTCCAAGAAGAACAAGATGAAGGATGAAAGCAACAAAACAGTACCCTATTTCAAACTTTTTTCATTTGCAGACTCTTCAGATTATCTACTGATGTTTGTCGGGATAGTAAGCGCTGTTGGAAATGGAATAACTAAGGCTTCAACGAATATAGTTATGGGAGAAGCAATTGATGCTTTTACACAACATGGCAACACTAAACATGTAGTTCATGAAGTTTCCAAGGTGTCTCTGAAGTTTGCAGTAATAGGTGTAGCTTCCTTTATGGCAGCTTTTCTACAGGTGGCTTGTTGGGTGTCCACCGGGGAGAGGCAGGCAGCGAGAATAAGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATATTAGCTTCTTCGACAAGGAAACCAACACTGCTGAGGTTGTTGGAAGGATATCAGGTGACACATTTCTTATTCAAGAAGCCATGGGAGACAAGGTAGGAAAATTCATACAGTGTGTGGCATGCTTTTTAGGAGGTATAGTCATAGCATTCATCAAGGGTTGGCTTCTAACTCTTGTCCTTCTATCTTGTGTTCCACCTCTTGTTTTCTCCGGTTCCATAATGAGCTTTGCGTTCGCAAAGTTGGCATCCCGCGGACAAGCAGCTTATTCTGAAGCAGCAACCGTAGTAGATCGCACAATTGGTTCAATTCGAACTGTTGCATCATTTACGGGCGAGAATCAAGCCATAGCTCAATACAGTCAATCCTTAAACGATGCTTACAGGACTGCAGTGCAAGACGGAATGGCTGCTGGTTTAGGCCTTGGTTCAATCCGTTTATTTATTAACAGTAGCTTTGCATTGGCTGTATGGTTCGGAGGGAAGATGGTACTAGAGGAAGGCTATACAGGAGGTGAAGTCATGAGTATATTTTACGCCCTATTTTTTGGCTCCATGTCGTTGGGGCAGGCTTTTACAAGTTTAACTGCATTCACTGCAGGACAGGCTGCCGCCTTTGAAATATTTGAAACAATAGATAGGCAGCCAAAAATTGATGCTTATGATACTGCAGGTCGACAGGTAGATGACATTTCTGGAGATATAGAACTTAGGGAGGTTTGCTTTTGTTATCCTTCAAGGCCAGATGAATTGATACTCAATGGATGTTCCATTTCAATATCAAGTGGCACTACTGCAGCTTTGGTTGGGAAAAGTGGCAGTGGGAAATCAACAGTTATTAGTCTGATTGAGAGATTTTATGATCCACAAGCCGGAGAAGTTCTCATTGACGGCATCAACCTCAGAGAATTTCAATTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCAGTCCTTTTTACTGGTAGCATCAAAGAAAATATTGCTTATGGTAAGGAAGGGGCAACAGATGAAGAAATCAGAGCTGCAATTGAACTTGCTAATGCAGCCAAATTCATAGATAGATTTCCGCATGGACATGATATGATTGTCGGTGAGCATGGTACACAGCTCTCTGGGGGTCAAAAGCAAAGAATTGCCATAGCACGGGCAATTCTAAAAGATCCAAGAATTCTACTCCTTGATGAAGCTACAAGTGCCCTCGATGCTGAGTCTGAGAGAGTGGTCCAAGAGACACTGGACAAAATTATGATAAACCGAACAACTGTCATTGTAGCACATCGCCTAAACACAATAAGGAATGCCGATACAATTGCTGTTATTCATCAAGGAAGAGTAGTAGAAAATGGTGTCCATGCTGACCTCGTTAAAGATCCTGATGGAGCTTACAGCCAACTCATTAGATTGCAAGAAATTAACAGGCACTCAGATGTTACAGATGACTCGGGAAAGCTAAAAAGCAGCAGTCGTCACTCATGCAGAATATCAAATGATATGCCTACTACACTTAATCTCTTGAAAACATCAGAAGGAGAACCTGAAGTTCTTACTCCAGCAGTACCGCATTCCTCTCCAAAAGTCTCGTTCCTTCAACTTGCTTATCTTAACAAGCCTGAAATTGCAGTGTTAGTCCTCGGGACTCTAGCAGCCACAGTAACTGGGGCCATACTTCCTCTTGTGGGGTTTCTTACCTCCTGCATGATAAATACTTTCTCTGAGCCAGCAAATGAACTTCGTAAAGACTCAAAGTTTTGGGCTGCGGTATTTATAGCCCTTGGAGCCGCTGGCTTCATATTTCATCCACTAAGGTCCTACTTTTTTGCTGTAGCTGGTTCGAAGTTGATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATTATTCACATGGAAGTAGCCTGGTTTGACAAAGCTGAGCATTCAAGTGGAGTACTGGGAGCAAGGCTGTCATTTGATGTGGCTTCTATTCGAACTTTTGTTGGGGATGCACTAAGTTTGATGGTTCAAGATATTGCTACAGTAGTTATAGCCTTGGCAATTGCCTTTGAGGCAAACTGGCAGCTTTCTCTCATCATGCTTGTTTTGCTACCACTATTACTAGTAAACGGACAAGTGCAAATGGGGTCCATGCAAGGATTTGTCACTGAGGCAAAGAAACTCTACGAAGAAGCAAGTCAAGTAGCAAATGATGCAGTAGGGAATATCAGAACAGTAGCTTCTTTCTGTGCAGAAGAAAAGATGATGGAGTTATACCAGAAGAAATGTTCAGGGACCATCCAGACAGGTATAAGGCAAGGTTTAGTCAGCGGAACAAGTTTTGGGATATCACTCTTCTTGGTGTTCTCAGTTAATGCAGGCAGCTTTTATGCTGCAGCCCGACTTGTCGAGAGCGGCAAAACATCAATCTCAGATGTTTTCCGAGTATTTTTCACTCTCACATTGGCAGCAGTAGCAATGACACAATCTGGCTTCATGGCCCCAGGTGCAAGTAAAGCAAAAAGTGCTGTTGCTTCTATATATGCTATTCTTGAGCAGAAATCAAATATAGACCCCAGTGATGAGTCTGGAATGATGTTGCAAGAAGTGAGAGGAGAGATTGAGTTCCACCACGTCACTTTCAAGTATCCAACCAGGCCTGATGTGCTTGTATTCAGAGATCTTTCCTTGACTATTAACGCAGGAGAGACAATTGCTCTAGCTGGAGAAAGTGGAAGTGGAAAGTCAACAGTAATATCATTATTGCAAAGATTTTATGACCCAGATTCAGGCCAGATAACACTAGATGGAACGGAAATAAAAAATCTACAACTCAAATGGTTTAGGAAGCAGATGGGCCTGGTGAGCCAGGAACCTATACTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTATAGCAGCAGCAGAACTGGCCAACGCGCACAAATTCATTAGCAGTTTGCAACAGGGTTACGATACAGTAGTAGGGGAGAGAGGGATTCAACTATCGGGAGGACAGAAGCAGCGGGTGGCAATTGCAAGAGCCATAGTGAAGAGTCCAAAAATATTACTGCTAGATGAAGCCACTAGCGCACTAGATGCTGAGTCTGAAAGAGTTGTTCAGGATGCACTTGACCGAGTGAGGGTGGACAAAACAACAATTGTGGTGGCTCACAGGTTATCCACCATAAAGGATGCAGATTCAATTGCAGTGGTTGAACATGGAGTCATTGCAGAGCAAGGAAAGCATGACACTTTGATTAACAAGGGTGGTATCTATGCTTCGTTAGTAGGCTTGCACACAACTCATGCTTCATCTTAG 3714 0.4289 MARQQGSKKNKMKDESNKTVPYFKLFSFADSSDYLLMFVGIVSAVGNGITKASTNIVMGEAIDAFTQHGNTKHVVHEVSKVSLKFAVIGVASFMAAFLQVACWVSTGERQAARIRGLYLKAILRQDISFFDKETNTAEVVGRISGDTFLIQEAMGDKVGKFIQCVACFLGGIVIAFIKGWLLTLVLLSCVPPLVFSGSIMSFAFAKLASRGQAAYSEAATVVDRTIGSIRTVASFTGENQAIAQYSQSLNDAYRTAVQDGMAAGLGLGSIRLFINSSFALAVWFGGKMVLEEGYTGGEVMSIFYALFFGSMSLGQAFTSLTAFTAGQAAAFEIFETIDRQPKIDAYDTAGRQVDDISGDIELREVCFCYPSRPDELILNGCSISISSGTTAALVGKSGSGKSTVISLIERFYDPQAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFTGSIKENIAYGKEGATDEEIRAAIELANAAKFIDRFPHGHDMIVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQETLDKIMINRTTVIVAHRLNTIRNADTIAVIHQGRVVENGVHADLVKDPDGAYSQLIRLQEINRHSDVTDDSGKLKSSSRHSCRISNDMPTTLNLLKTSEGEPEVLTPAVPHSSPKVSFLQLAYLNKPEIAVLVLGTLAATVTGAILPLVGFLTSCMINTFSEPANELRKDSKFWAAVFIALGAAGFIFHPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVAWFDKAEHSSGVLGARLSFDVASIRTFVGDALSLMVQDIATVVIALAIAFEANWQLSLIMLVLLPLLLVNGQVQMGSMQGFVTEAKKLYEEASQVANDAVGNIRTVASFCAEEKMMELYQKKCSGTIQTGIRQGLVSGTSFGISLFLVFSVNAGSFYAAARLVESGKTSISDVFRVFFTLTLAAVAMTQSGFMAPGASKAKSAVASIYAILEQKSNIDPSDESGMMLQEVRGEIEFHHVTFKYPTRPDVLVFRDLSLTINAGETIALAGESGSGKSTVISLLQRFYDPDSGQITLDGTEIKNLQLKWFRKQMGLVSQEPILFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTVVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVRVDKTTIVVAHRLSTIKDADSIAVVEHGVIAEQGKHDTLINKGGIYASLVGLHTTHASS 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00420 1237 FunFam ABC transporter B family member 1 651 959 - -
Vian1g00420 1237 PANTHER ABC TRANSPORTER B FAMILY 5 601 IPR039421 -
Vian1g00420 1237 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524|GO:0016887
Vian1g00420 1237 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 672 958 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00420 1237 Pfam ABC transporter 378 527 IPR003439 GO:0005524
Vian1g00420 1237 Gene3D - 350 599 IPR027417 -
Vian1g00420 1237 Gene3D - 983 1232 IPR027417 -
Vian1g00420 1237 CDD ABC_MTABC3_MDL1_MDL2 993 1228 - -
Vian1g00420 1237 ProSitePatterns ABC transporters family signature. 1133 1147 IPR017871 GO:0005524|GO:0016887
Vian1g00420 1237 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Vian1g00420 1237 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 333 - -
Vian1g00420 1237 Pfam ABC transporter transmembrane region 671 943 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00420 1237 Pfam ABC transporter transmembrane region 37 311 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00420 1237 SUPERFAMILY ABC transporter transmembrane region 18 344 IPR036640 GO:0005524|GO:0016020
Vian1g00420 1237 Pfam ABC transporter 1012 1161 IPR003439 GO:0005524
Vian1g00420 1237 SUPERFAMILY ABC transporter transmembrane region 661 977 IPR036640 GO:0005524|GO:0016020
Vian1g00420 1237 CDD ABC_6TM_Pgp_ABCB1_D2_like 661 976 - -
Vian1g00420 1237 Gene3D ABC transporter type 1, transmembrane domain 24 958 IPR036640 GO:0005524|GO:0016020
Vian1g00420 1237 FunFam ABC transporter B family member 1 983 1232 - -
Vian1g00420 1237 Gene3D ABC transporter type 1, transmembrane domain 959 1233 IPR036640 GO:0005524|GO:0016020
Vian1g00420 1237 SMART AAA_5 387 573 IPR003593 GO:0016887
Vian1g00420 1237 SMART AAA_5 1020 1213 IPR003593 GO:0016887
Vian1g00420 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 982 1230 IPR027417 -
Vian1g00420 1237 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 325 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00420 1237 FunFam ABC transporter B family member 9 24 356 - -
Vian1g00420 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 598 IPR027417 -
Vian1g00420 1237 CDD ABC_MTABC3_MDL1_MDL2 360 598 - -
Vian1g00420 1237 FunFam ABC transporter B family member 1 350 599 - -
Vian1g00420 1237 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 993 1230 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00420 Vian-Chr1 3857256 3865694 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00420 7 618 Calmodulin-binding Proteins AT2G36910 37.115 3.57e-112 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00420 K05658 - gmx:100798707 2034.61