Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00419 ATGCCTATCACACCAGATCGCTTTCAAACACCAAAAGAATGGCCCGAAATTCTTCCGTCAGCAACATTACATACGCCTCGAGAAGTTTCGTTTTTCCGCATTGCTTATCTTAACAAACCTGAAATCCCAGTGTTGCTCATGGGAACTCTAGCAGCAGCAGCAACTGGCGCAGTACAACCCACTATGGGGCTTTTGCTTTCCAACATGATAAATACTTTCCTTGAGCCTGCAGATGAACTCCGTAAAGACTCAAAGTTTTGGTCATTAATATTTGTTGCCCTTGGTATCGCTGCCTTCATACTTATTTCATTAAGGTCCTACTTCTTTGGTGTAGCTGGTTCTAAGTTGATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATAACTCACATGGAAATGGGCTGGTTTGATAAAGCTGAAAATTCAAGTGGAGTTCTTGGTGCAAGGCTGTCAACTGATGCAGCTTCCATTAGAACTTTGGTTGGGGATGCTCTTGGTTTGTTGATTCAAGATATCTCGACAGCATTGACAGCCTTGGTAATTGCCTTTCAGGCAAACTTCCAACTTTCTCTAATCATTCTAGTTTTGGTGCCACTAGTGTTACTAAATGGATATTTACAAATGAAGTCAATGCAAGGTTTCAGCACAGATGCAAAGAAACTATATGAGGAAGCAAGTCAAGTAGCAAATGATGCAGTAGGGAATATAAGAACAGTTGCCTCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTATACCAGAAGAAATGTTTAGGACCGATCCAGACAAGTATAAAGCTAGCTTTAATCAGCGGAGCAGGCTTTGGTTTATCAATCTTCTTTCTGTACGCTTTTAATGCATGCGGTTTTTATGTTGGAGCAAGACTAATTGAGAATGGCAAAGCATCATTCTCAGATGTTTTCCGTGTATTTTATGTTATAATAATGGCAGCCATAGCAATGTCGCAATCTGGCTTCCTGACCCCAGCTGCCAGTAAAGCAAAATGTTCTGTTGCTTCTATATTTGCTATTCTTGATCAGAAATCAAGAATAGATCCCAGTGATGAATCTAGAATGACATTACAAGAAGTGAAGGGAGAGATTGAGTTTCACCATGTCACTTTCAAGTATCCAACCAGGCCTAATGCTCTTGTATTCAAAGATCTTTCCTTGACTATTCATGCAGGAGAGACTGTTGCACTGGTAGGTAAAAGTGGAAGTGGAAAGTCAACAATGCTCTCACTGTTACAGAGATTTTACGACCCAGATTCAGGTCAAATCACACTGGATGGAACAGAAGTCCAAAAGCTAAAACTTAAATGGCTTAGGCAGCAGATGGGTCTGGTGAGCCAGGAGCCTGTGTTGTTTGATGACACCATTCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTGTAGCTGCAGCAGAACTGGCAAATGCGCACAAGTTCATTAGCAGTTTGCAGCAGGGATATGATACATTAGTGGGGGTGAGAGGGATTCAATTATCCGGAGGACAGAAGCAGAGGGTGGCAATTGCAAGATCCATAGTAAAGAGTCCAAAAATATTACTGCTAGATGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAGAATGGTTCAGGATGCACTTGACAGAGTGAGGCTGGATAGAACCACAGTTGTGGTGGCTCACAGGTTATCCACCATAAAGGATGCAGATTCAATTGCAGTGGTTGAATATGGAGTCATTGCAGAGAAAGGAAAGCATGAGACTTTACTTAACAAAGGTGGTACATATGCTTCCTTAGTAGCACTTCACATCAGTGCTTCTTCTTTATAA 1836 0.4161 MPITPDRFQTPKEWPEILPSATLHTPREVSFFRIAYLNKPEIPVLLMGTLAAAATGAVQPTMGLLLSNMINTFLEPADELRKDSKFWSLIFVALGIAAFILISLRSYFFGVAGSKLIKRIRLMCFEKITHMEMGWFDKAENSSGVLGARLSTDAASIRTLVGDALGLLIQDISTALTALVIAFQANFQLSLIILVLVPLVLLNGYLQMKSMQGFSTDAKKLYEEASQVANDAVGNIRTVASFCAEEKVMELYQKKCLGPIQTSIKLALISGAGFGLSIFFLYAFNACGFYVGARLIENGKASFSDVFRVFYVIIMAAIAMSQSGFLTPAASKAKCSVASIFAILDQKSRIDPSDESRMTLQEVKGEIEFHHVTFKYPTRPNALVFKDLSLTIHAGETVALVGKSGSGKSTMLSLLQRFYDPDSGQITLDGTEVQKLKLKWLRQQMGLVSQEPVLFDDTIRANIAYGKGGDATEAEIVAAAELANAHKFISSLQQGYDTLVGVRGIQLSGGQKQRVAIARSIVKSPKILLLDEATSALDAESERMVQDALDRVRLDRTTVVVAHRLSTIKDADSIAVVEYGVIAEKGKHETLLNKGGTYASLVALHISASSL 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00419 611 CDD ABC_6TM_Pgp_ABCB1_D2_like 35 350 - -
Vian1g00419 611 ProSitePatterns ABC transporters family signature. 507 521 IPR017871 GO:0005524|GO:0016887
Vian1g00419 611 Gene3D ABC transporter type 1, transmembrane domain 26 299 IPR036640 GO:0005524|GO:0016020
Vian1g00419 611 Pfam ABC transporter transmembrane region 45 317 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00419 611 Gene3D - 357 605 IPR027417 -
Vian1g00419 611 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 85 601 IPR039421 -
Vian1g00419 611 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 46 332 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00419 611 SMART AAA_5 394 587 IPR003593 GO:0016887
Vian1g00419 611 Pfam ABC transporter 386 535 IPR003439 GO:0005524
Vian1g00419 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 604 IPR027417 -
Vian1g00419 611 FunFam ABC transporter B family member 1 357 606 - -
Vian1g00419 611 CDD ABC_MTABC3_MDL1_MDL2 367 602 - -
Vian1g00419 611 FunFam Uncharacterized protein 331 357 - -
Vian1g00419 611 Gene3D ABC transporter type 1, transmembrane domain 309 356 IPR036640 GO:0005524|GO:0016020
Vian1g00419 611 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 367 604 IPR003439 GO:0005524
Vian1g00419 611 FunFam ABC transporter B family member 1 25 330 - -
Vian1g00419 611 SUPERFAMILY ABC transporter transmembrane region 34 351 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00419 Vian-Chr1 3851096 3853503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00419 47 608 Calmodulin-binding Proteins AT2G36910 37.213 4.10e-118 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00419 K05658 - gmx:100777713 964.911