Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00418 ATGACTTCAACTGCACCAGTTCAAGATACTGGAAATACCCAAAAAAACATGGTTGACAAGCAGCAAGAGTCTAAGAAAAACAAAGTGAAGAATGAAGTCAATAAAACAGTTCCCTTTCACAAGCTATTCTCATTTGCACGTCCTTGGGATTGCTTTCTGATGCTTGTTGGGTCAATAAGTGCTGTTAGTACTGGAATCTCTTCATGTTTAATGGCTATACTTGTTGGAGGTATGATTGATGCTTTTGGAGGACATGCTGATGATAAACAAGTAGTTCATGAAGTATCTAAGGTGTCTCTGAAGCTTGCATCCATAGGTGCAGGTTCCTTTTTAGCAGCATTCTTGCAGGTATCTTGCTGGGTGATCACTGGGGAGAGACAAGCTGCAAGAATAAGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATATCAGCTTCTTTGACAAGGAAACCAACAGTGGCGAGGTTGTTGGAAGGATGTCAGGGGACACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAGTTCATACAGCATCTGTCATGTTTTTTAGGAGGCATAGTCATAGCCTTCGTCAAGGGTTGGCTTCTGAGCCTTGTCCTTCTATCTTCTCTTCCTCTTCTAGTCTTGTCTGGCTCCTTAATGAGCTTAGCTTATGCAAAGATGGCATCTAGAGGACAAGAAGCTTATTCTGAAGCAGCAACTGTAGTGGATAAGATAATTGGTTCAATTCGAACTGTTGCGTCATTTACTGGTGAGAAACAAGCTATAGCTCAATACAATCGATACTTAACTAAAGCTTACAGAATTGGAGTTCAAGAGGGTGTTGTGAGTGGTTTTGGCTTGGGTTTAATGCATTTATTTTCAATCTGTACTTACGGTTTGGCAACATGGTTTGGAGGGAAGATGGTACTGGATAAAGGTTACACAGGAGGACAAGTCATCTGTGTATTTTCGTTAATATTGTCCGGTTCCTTTCGTCTGGGGCAAGTATCTCCAAGCTTAACTGCATTTGCTGCAGGCCAAGCTGCTGCCTTTAAAATGTTTGAAACAATAGAACGGCAGCCGGATATTGATGTTTGTGACACTGGTAGTCGACAGCTAGATGATATTTCCGGAAATATTGAACTTAGGGAGGTCTGCTTTAGTTATCCTTCCAGACCAGATGAATTGATATTCGATCGATTTTCCATTTCAATATCAAGTGGCACTACTGTAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCAACAGTTATAAGTTTAATTGACAGATTTTATGATCCAAACGCTGGTGAAGTTCTCATTGATGGTATCAACCTCAGAGAATTTCAATTGAAGTGGATCAGACAGAAAATTGGCCTTGTCAGCCAGGAGCCAGTTCTTTTTACTTGCAGCATTAAAGAGAATATTGCCTATGGAAAGGATGGGGCAACAGATGAAGAAATCAGAGCTGCAGCTGAACTTGCAAATGCTTCTAATTTCATAGATAAACTTCCTCACGGACTTGACACAAAGGTTGGCGAGCGTGGACTTCAGATCTCTGGAGGTCAAAAACAAAGAATATCTATAGCAAGAGCAGTACTGAAGGACCCAAGAATTCTGCTCCTTGATGAAGCCACAAGTGCTCTTGATGTAGAATCAGAGAGAGTGGTGCAGGAGACACTAGACATAATTATGATCAACAGAACAACTGTCATTGTAGCCCATCGCTTAAGCACGATCAGGAATTCTGATATCATTGCAGTTATTCATCAAGGAAAACTACAAGAAAAAGGTTCATATGCTGAACTTACTAATGATCCTGATGGAGCTTTTAGCCAGCTCATTAGATTGCAAGAAATTAGAAGCGAGTCAGAACAGCATGATGCAAACGAATCGGGCCGGCCAGAAAACTTAATAGATTCTGAACAACAATTGAGCCAACAATTTTCTTTGCCTCTAGCATTCAGCCATCAATCATCTGGAAGAGAAAACAGAAGTCAGCACGCATTCAAAACGTCCAATGCCATGCCTATCACACCAGATCGCTTTCAAACACCAAAAGAATGGCCTGAAGTTCTTCCGTCGGCAACATTGCATAAGCCTCGAGAAGTTTCGTTTTTCCGCATTGCTTATCTTAACAAACCTGAAATCCCAGTGTTACTGATGGGGGCTCTGGCAGCTGCTGCAACTGGCGCAATACTACCCACCATGGGGTTTCTTCTTTCTCACTCGATAAGTACTTTCTTTGAGCCTGCAGATGAACTCCATAAAGATTCAAAGTTTTGGTCTTTACTATTTTTTTCCCTCAGTGTTGCCTCCTTCATATTTCATCCGTTAAGGTCTTACTCTTTCGCGGTAGCCGGTTCTAGGTTGATAAAAAGGATCCGCCTGATGTGTTTTGAGAAAATAATTCACATGGAAATGGGCTGGTTTGATAAAGATGAAAATTCATGTGGAACACTTGGAGCAAGGCTGTCAACTGATGCAGTTTCTATTCGAACATTGGTCGGGGATGCTCTAGGTTTGCTTGTTCAGGATATTGCTACAACAACTACAGCATTGGCAATTGCCTTTGCGGCAAACTGGCAGCTTTCCCTCATTGTTGTTTTCTTAGTACCTCTCTTATTACTGAATGGATATGTTCAAATGAAGTCAATGCAAGGATTCCGAACTGAAGCAAAGAAACTGTACGAGGAAGCAAGTCAAGTAGCAAATGATGCAGTAGGGAATATAAGAACAGTTGCCGCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATACCAGAAGAAATGTGTAGGGCCAATCCAGACAAGTATAAGGCAAGGTTTAGTCAGCGGAACAGGTTTCGGTTTATCACTCTTCTTTCTGTTTTCAGTTAACGCCTGCAGCTTTTATGCTGGAGCAAGACTCGTTCAGAATGGCAAAGCGTCATCATCAGATGTTTTCCGTGTATTTTATGCCCTCATGATGGCAGCTATAGCAATGTCACAATCTAGTTTCATGACTCCAGCTGCTAGTAAAGGAAAAAGCTCTGTTGCTTCTGTATTTGCCATTCTTAATCAGAAATCGAGAATAGATCCCAGCGATGAGTCCGGAATGACATTGGAAGAAGTGAAGGGAGAGATTGAGTACAGTCATGTCACTTTCAAGTATCCAACCAGGCCAAATGTTGTTGTACTCAAAGATTTTTCCTTGACCATTCAAGCCGGAGAGACAGTTGCTCTAGTTGGTGAAAGTGGAAGTGGAAAGTCAACAGTGATCTCATTATTACAAAGATTTTACGAACCAGAATCAGGTCAGATTACAGTGGATGGAACAGAAATCCAAAAGCTAAAACTTAGATGGTTTAGGCAGCAGATGGGTCTGGTAAGCCAGGAGCCTGTGTTGTTTAATGATACCATTCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTATAGCTGCAGCAGAATTGGCAAATGCACACAAGTTCATTAGCAGTTTGCAGCAGGGCTATGATACATTGGTGGGAGAGAGAGGGATTCAACTATCTGGAGGGCAGAAGCAGCGGGTGGCAATTGCAAGAGCCATAATGAAGAATCCAAAAATATTACTACTAGATGAAGCCACAAGTGCACTTGATGCCGAGTCTGAAAGAGTGGTCCAGGATGCACTTGATCGAGTGAGGTTGGACAGAACCACCATTGTGGTGGCTCATAGGCTATCATCCATAAAGGATGCAGATTCAATTGCAGTGGTTAAAAATGGAGTCATTGAAGAGAAAGGAAAGCATGAGACCTTGATTAACAAATGTGGTACATATGCTTCTTTAGTTGCACTGCATATCAGTGTTGCTTCATCATAG 3852 0.4182 MTSTAPVQDTGNTQKNMVDKQQESKKNKVKNEVNKTVPFHKLFSFARPWDCFLMLVGSISAVSTGISSCLMAILVGGMIDAFGGHADDKQVVHEVSKVSLKLASIGAGSFLAAFLQVSCWVITGERQAARIRGLYLKAILRQDISFFDKETNSGEVVGRMSGDTVLIQEAMGEKVGKFIQHLSCFLGGIVIAFVKGWLLSLVLLSSLPLLVLSGSLMSLAYAKMASRGQEAYSEAATVVDKIIGSIRTVASFTGEKQAIAQYNRYLTKAYRIGVQEGVVSGFGLGLMHLFSICTYGLATWFGGKMVLDKGYTGGQVICVFSLILSGSFRLGQVSPSLTAFAAGQAAAFKMFETIERQPDIDVCDTGSRQLDDISGNIELREVCFSYPSRPDELIFDRFSISISSGTTVALVGQSGSGKSTVISLIDRFYDPNAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANASNFIDKLPHGLDTKVGERGLQISGGQKQRISIARAVLKDPRILLLDEATSALDVESERVVQETLDIIMINRTTVIVAHRLSTIRNSDIIAVIHQGKLQEKGSYAELTNDPDGAFSQLIRLQEIRSESEQHDANESGRPENLIDSEQQLSQQFSLPLAFSHQSSGRENRSQHAFKTSNAMPITPDRFQTPKEWPEVLPSATLHKPREVSFFRIAYLNKPEIPVLLMGALAAAATGAILPTMGFLLSHSISTFFEPADELHKDSKFWSLLFFSLSVASFIFHPLRSYSFAVAGSRLIKRIRLMCFEKIIHMEMGWFDKDENSCGTLGARLSTDAVSIRTLVGDALGLLVQDIATTTTALAIAFAANWQLSLIVVFLVPLLLLNGYVQMKSMQGFRTEAKKLYEEASQVANDAVGNIRTVAAFCAEEKVMELYQKKCVGPIQTSIRQGLVSGTGFGLSLFFLFSVNACSFYAGARLVQNGKASSSDVFRVFYALMMAAIAMSQSSFMTPAASKGKSSVASVFAILNQKSRIDPSDESGMTLEEVKGEIEYSHVTFKYPTRPNVVVLKDFSLTIQAGETVALVGESGSGKSTVISLLQRFYEPESGQITVDGTEIQKLKLRWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTLVGERGIQLSGGQKQRVAIARAIMKNPKILLLDEATSALDAESERVVQDALDRVRLDRTTIVVAHRLSSIKDADSIAVVKNGVIEEKGKHETLINKCGTYASLVALHISVASS 1283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00418 1283 MobiDBLite consensus disorder prediction 658 683 - -
Vian1g00418 1283 CDD ABC_MTABC3_MDL1_MDL2 377 615 - -
Vian1g00418 1283 FunFam ABC transporter B family member 1 1029 1278 - -
Vian1g00418 1283 MobiDBLite consensus disorder prediction 1 29 - -
Vian1g00418 1283 Gene3D - 1029 1280 IPR027417 -
Vian1g00418 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 718 1004 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00418 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 377 613 IPR003439 GO:0005524
Vian1g00418 1283 Pfam ABC transporter transmembrane region 55 328 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00418 1283 Pfam ABC transporter transmembrane region 717 989 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00418 1283 FunFam Uncharacterized protein 1003 1029 - -
Vian1g00418 1283 Pfam ABC transporter 396 544 IPR003439 GO:0005524
Vian1g00418 1283 CDD ABC_MTABC3_MDL1_MDL2 1039 1274 - -
Vian1g00418 1283 MobiDBLite consensus disorder prediction 1 18 - -
Vian1g00418 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1039 1276 IPR003439 GO:0005524
Vian1g00418 1283 ProSitePatterns ABC transporters family signature. 516 530 IPR017871 GO:0005524|GO:0016887
Vian1g00418 1283 Gene3D ABC transporter type 1, transmembrane domain 41 627 IPR036640 GO:0005524|GO:0016020
Vian1g00418 1283 Gene3D - 367 616 IPR027417 -
Vian1g00418 1283 FunFam ABC transporter B family member 1 367 616 - -
Vian1g00418 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 615 IPR027417 -
Vian1g00418 1283 FunFam ABC transporter B family member 9 41 373 - -
Vian1g00418 1283 ProSitePatterns ABC transporters family signature. 1179 1193 IPR017871 GO:0005524|GO:0016887
Vian1g00418 1283 Pfam ABC transporter 1057 1207 IPR003439 GO:0005524
Vian1g00418 1283 SUPERFAMILY ABC transporter transmembrane region 705 1023 IPR036640 GO:0005524|GO:0016020
Vian1g00418 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1028 1276 IPR027417 -
Vian1g00418 1283 CDD ABC_6TM_Pgp_ABCB1_D1_like 54 338 - -
Vian1g00418 1283 CDD ABC_6TM_Pgp_ABCB1_D2_like 732 1022 - -
Vian1g00418 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 55 342 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00418 1283 SMART AAA_5 1066 1260 IPR003593 GO:0016887
Vian1g00418 1283 SMART AAA_5 404 590 IPR003593 GO:0016887
Vian1g00418 1283 SUPERFAMILY ABC transporter transmembrane region 40 361 IPR036640 GO:0005524|GO:0016020
Vian1g00418 1283 MobiDBLite consensus disorder prediction 658 677 - -
Vian1g00418 1283 FunFam ABC transporter B family member 1 697 1002 - -
Vian1g00418 1283 PANTHER ABC TRANSPORTER B FAMILY 15 617 IPR039421 -
Vian1g00418 1283 Gene3D ABC transporter type 1, transmembrane domain 685 1027 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00418 Vian-Chr1 3839356 3844984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00418 22 1277 Calmodulin-binding Proteins AT2G36910 41.660 0.0 986
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00418 K05658 - gmx:100777713 1945.24