Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00417 ATGACAGGATCAAGAAGTGATGATCCAGCAGTTCAAGGTCCTGAAAATACCCAAGAAACGGATGACAGGCAGCAGGATTCCAACAGGGGCAAGGCGAAGCATGAAAGCAATAAAACAGTACCCTTTTACAAACTTTTCTCATTTGCAGACTATTGGGATTGTCTTCTGATGCTTGTTGGGGCAATAAGTGCTGTTGCTAATGGAATCGTTATGCCTTTAATGACTATACTTATTGGAGATGCTATTGATGCTTTCGGAGGAAATGCTGATAATAAACAAGAAGTAGTTCATGAAGTATCCAAGGCATCTATGAAGTTTGCAGCCATAGGTGCAGGTGCCTTTTTTGCAGCATTCTTCCAGGTGTCTTGCTGGGTGATCACTGGGGAGAGACAAGCTGCAAGAATAAGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATATCATCTTCTTTGACAAGGAAACCAACAGTGGCGAGGTTGTTGGAAGGATGTCAGGGGACACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATCCAATATGTGGCATGTTTTTTTGGAGGTATAGTCATAGCATTCATCAAGGGTTGGCTTCTAAGCCTTGTGCTTCTATCTTCTCTTCCTCTTCTTGTCCTCTCTGGTTCCATAATGAGCTTTGCTTTTGCAAAGATGGCATCCCGAGGACAAGCAGCTTATTCCGAAGCAGCAACTCTAGTGGAGCGGACAATTGGTTCAATTCGAACTGTAGCATCATTTACCGGAGAGAAGCAAGCTATAGCTCAATACAATCAATACTTAACAAAAGCTTACAGAGTGGGAGTGCAAGAGGGTTTGGCTGGTGGGTTTGGCTTTGGTTTTGTTCGTTTATTTGTTTACTGTACCTATGGTTTGACAATTTGGTTTGGAGGGAAGATGGTTATAGAGAAAGGTTATACGGGAGGACAAGTCATTAGTGTATTTTTTGCAGTTTTGACGGGCTCTATGTCTCTGGGACAGGCATCTCCAAGCTTAGCTGCATTTGCTGCAGGACAAGCAGCAGCATTTAAAATGTTTGAAACAATAAAGAGGCAACCAGATATTGATGCTTATGACTCTTCTGGTCAACAACTAGATGACATTTCAGGAGATATAGAACTTAGGGAGGTTTGTTTTAGTTATCCTTCAAGACCGGATGAGCAGATTTTCAATAGATTTTCAATTTCAATATCAAGTGGCACTACTGCAGCATTGGTAGGGCAAAGTGGAAGTGGGAAATCAACAGTTATCAGTTTAATTGAAAGATTTTATGATCCAAACGCTGGTGAAGTTCTCATTGATGGCATCAACCTCAGAGGATTTCAATTGAAGTGGATCAGACAGAAAATTGGCCTTGTCAGCCAGGAGCCAGTTCTTTTTACTTGCAGCATTAAAGAGAATATTGCCTATGGAAAGGAACGGGCAACAGATGAAGAAATAAGAGCAGCAGCTGCACTTGCAAATGCTTCTAATTTCATAGATAAATTTCCCCATGGATTTGACACAATGGTTGGAGAGCATGGAACTCAACTCTCTGGAGGTCAAAAGCAAAGAATATCTATAGCGAGAGCAATTCTGAAGGACCCAAGAATTCTGCTCCTTGATGAAGCTACAAGTGCTCTAGATGTGGAATCAGAAAGAGTAGTGCAAGAGACACTAGACAGAATTATGATCAACCGAACAACTGTCATTGTAGCTCACCGCCTTAGCACAATAAGGAATGCTGATGTCATTGCCGTTATTCATCAAGGAAATGTCGTAGAAAAAGGTACACATGCTGACCTCACTCAAGATCCTGATGGAGCTTTTAGCCAGCTCGTTAGATTGCAAGAAATTAAAAGGGAGTCAGAACAGCATGATGCAAATTACTTAAGCAGGCCAGAAAACTTGGTAGATTCTAAACGACAACCGAGCCAACGGTATTCTTTCCCTCAATCTTTAAGCCGGGGATCATCTGGAAGAGGAAGCAGCAGTCAGAACTCATTCAGAATATCAAATGCCATGCCCACCACGCATGATCACTTTGAAACCTCAGAAGGAGGGTCTGGAGATTTTCCTTCAGCAGCATCAGATAAACCTAAGGAAATTTCAATTCTCCGCATTGCTTATCTTAACAAGCCTGAAATCCCATTGTTACTCGTGGGGACTCTAGCAGCAGCAGTAACAGGGGCAATACTACCCACCGTGGGGCTCCTTCTTTCCCACATGATAAATACTTTCTTTGAGCCCGCAGATGAACTCCGGAAAGACTCCAAATTTTGGGCACTAATATTTGTTGCTCTTAGTGTGGGTGCCTTCATATTTCTTCCATTAAGGTCCTACTTTTTTTCTGTAGCTGGTTGTAAGTTAATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATAATTCACATGGAAATAAGCTGGTTCGATAAAGCCGAAAATTCAAGTGGAGCACTTGGAGCAAGGCTGTCCACTGATGCAGCTTCTATTCGAACTTTGGTTGGGGATGCTCTTGGTTTGCTGGTTCAAGATATTGCTACAGTAGTTACAGCCTTGGCAATTGCCTTTGACGCAAACTGGCAGCTTTCTCTCATAGTTCTTGTTTTGGTACCTCTAATAGTTCTAAATGGACATCTGCAAATGAAGTCCATGCAAGGATTCAGCGCAGATGCAAAGAAACTATATGAGGAAGCAAGCCAAGTAGCGAATGATGCAGTAGGGAATATCAGAACAGTTGCTGCTTTCTGTGCTGAAGAGAAGGTAATGAATTTTTATGCTGGGGCTAAACTTGTAGAGAAGGGAAAAACATCAATCTCAGACGTTTTCCGTGTATTTTTTTCTCTCTCGATGGCAGCTATAGCAATGTCACAATCTGGCTTCATGACCCCAGCTGCAAGTAAAACAGAAAGTTCTGCAGCTTCTGTATTTGCTATCCTTGATCAGAAATCAATAATAGATACCAGTGACGAGTTAGGAATGACATTGGAACAAGTGAAGGGAGATATCGAGTTTCACCATGTCACTTTCAAGTATCCAACCAGACCCCATGTTCCTGTATTCAAAGATCTTTCCTTGACCATTCACGCAGGAGAGACAATTGCTCTAGTTGGTGAAAGTGGAAGTGGAAAGTCAACTGTGATCTCATTGTTACAAAGATTTTACGACCCAGATTCAGGTCAGATTACACTGGATGGAACAGAAATCCAAAAGCTAAAACTTAAATGGTTTAGGCAGCAGATGGGTCTGGTAAGCCAGGAGCCTGTGTTGTTTAATGACACCATTCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAGGCTGAAATTATAGCTGCAGCAGAACTGGCAAATGCACACAAGTTCATTAGCAGTTTGCAGCAGGGTTATGATACATTAGTGGGGGAGAGAGGGATTCAACTTTCTGGAGGGCAGAAGCAGCGGGTGGCAATTGCAAGAGCCATCGTGAAGAGTCCAAAAATATTACTGCTAGATGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAGAGTGGTTCAGGATGCACTTGATCGAGTGAGGGTGGACAGAACCACAATTGTGGTTGCTCACAGGTTATCCACCATAAAGGATGCAGATTTAATTGCAGTGGTTAAAAATGGAGTCATTGCAGAGAAAGGAAAGCACGACACCTTGCTTAACAAAGGTGGTGCATATGATTCGTTGGTAGCACTGCATATTAGTGCTGCTTCATCATAG 3750 0.4235 MTGSRSDDPAVQGPENTQETDDRQQDSNRGKAKHESNKTVPFYKLFSFADYWDCLLMLVGAISAVANGIVMPLMTILIGDAIDAFGGNADNKQEVVHEVSKASMKFAAIGAGAFFAAFFQVSCWVITGERQAARIRGLYLKAILRQDIIFFDKETNSGEVVGRMSGDTVLIQEAMGEKVGKFIQYVACFFGGIVIAFIKGWLLSLVLLSSLPLLVLSGSIMSFAFAKMASRGQAAYSEAATLVERTIGSIRTVASFTGEKQAIAQYNQYLTKAYRVGVQEGLAGGFGFGFVRLFVYCTYGLTIWFGGKMVIEKGYTGGQVISVFFAVLTGSMSLGQASPSLAAFAAGQAAAFKMFETIKRQPDIDAYDSSGQQLDDISGDIELREVCFSYPSRPDEQIFNRFSISISSGTTAALVGQSGSGKSTVISLIERFYDPNAGEVLIDGINLRGFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKERATDEEIRAAAALANASNFIDKFPHGFDTMVGEHGTQLSGGQKQRISIARAILKDPRILLLDEATSALDVESERVVQETLDRIMINRTTVIVAHRLSTIRNADVIAVIHQGNVVEKGTHADLTQDPDGAFSQLVRLQEIKRESEQHDANYLSRPENLVDSKRQPSQRYSFPQSLSRGSSGRGSSSQNSFRISNAMPTTHDHFETSEGGSGDFPSAASDKPKEISILRIAYLNKPEIPLLLVGTLAAAVTGAILPTVGLLLSHMINTFFEPADELRKDSKFWALIFVALSVGAFIFLPLRSYFFSVAGCKLIKRIRLMCFEKIIHMEISWFDKAENSSGALGARLSTDAASIRTLVGDALGLLVQDIATVVTALAIAFDANWQLSLIVLVLVPLIVLNGHLQMKSMQGFSADAKKLYEEASQVANDAVGNIRTVAAFCAEEKVMNFYAGAKLVEKGKTSISDVFRVFFSLSMAAIAMSQSGFMTPAASKTESSAASVFAILDQKSIIDTSDELGMTLEQVKGDIEFHHVTFKYPTRPHVPVFKDLSLTIHAGETIALVGESGSGKSTVISLLQRFYDPDSGQITLDGTEIQKLKLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTLVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVRVDRTTIVVAHRLSTIKDADLIAVVKNGVIAEKGKHDTLLNKGGAYDSLVALHISAASS 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00417 1249 FunFam ABC transporter B family member 1 701 930 - -
Vian1g00417 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 381 617 IPR003439 GO:0005524
Vian1g00417 1249 MobiDBLite consensus disorder prediction 19 34 - -
Vian1g00417 1249 MobiDBLite consensus disorder prediction 1 34 - -
Vian1g00417 1249 FunFam ABC transporter B family member 1 371 620 - -
Vian1g00417 1249 Pfam ABC transporter 1024 1173 IPR003439 GO:0005524
Vian1g00417 1249 Gene3D ABC transporter type 1, transmembrane domain 701 927 IPR036640 GO:0005524|GO:0016020
Vian1g00417 1249 Gene3D ABC transporter type 1, transmembrane domain 928 994 IPR036640 GO:0005524|GO:0016020
Vian1g00417 1249 CDD ABC_6TM_Pgp_ABCB1_D2_like 711 988 - -
Vian1g00417 1249 ProSitePatterns ABC transporters family signature. 520 534 IPR017871 GO:0005524|GO:0016887
Vian1g00417 1249 FunFam ABC transporter B family member 1 995 1244 - -
Vian1g00417 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 722 931 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00417 1249 MobiDBLite consensus disorder prediction 1 18 - -
Vian1g00417 1249 Pfam ABC transporter 400 548 IPR003439 GO:0005524
Vian1g00417 1249 SMART AAA_5 1032 1225 IPR003593 GO:0016887
Vian1g00417 1249 SMART AAA_5 408 580 IPR003593 GO:0016887
Vian1g00417 1249 CDD ABC_6TM_Pgp_ABCB1_D1_like 57 341 - -
Vian1g00417 1249 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524|GO:0016887
Vian1g00417 1249 CDD ABC_MTABC3_MDL1_MDL2 381 619 - -
Vian1g00417 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 619 IPR027417 -
Vian1g00417 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 58 346 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00417 1249 Gene3D - 371 620 IPR027417 -
Vian1g00417 1249 Gene3D - 995 1243 IPR027417 -
Vian1g00417 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 997 1242 IPR027417 -
Vian1g00417 1249 SUPERFAMILY ABC transporter transmembrane region 44 365 IPR036640 GO:0005524|GO:0016020
Vian1g00417 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1005 1242 IPR003439 GO:0005524
Vian1g00417 1249 PANTHER ABC TRANSPORTER B FAMILY 17 623 IPR039421 -
Vian1g00417 1249 MobiDBLite consensus disorder prediction 626 674 - -
Vian1g00417 1249 FunFam ABC transporter B family member 9 44 377 - -
Vian1g00417 1249 Pfam ABC transporter transmembrane region 58 332 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00417 1249 Pfam ABC transporter transmembrane region 721 926 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00417 1249 MobiDBLite consensus disorder prediction 638 674 - -
Vian1g00417 1249 CDD ABC_MTABC3_MDL1_MDL2 1005 1240 - -
Vian1g00417 1249 Gene3D ABC transporter type 1, transmembrane domain 44 631 IPR036640 GO:0005524|GO:0016020
Vian1g00417 1249 SUPERFAMILY ABC transporter transmembrane region 709 985 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00417 Vian-Chr1 3830101 3835618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00417 695 1246 Calmodulin-binding Proteins AT2G36910 38.182 1.56e-112 381