Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00416 ATGGCTGTTTTGACTGGCTCCGCGTCTCTTGGGCAGGCATCTCCAAGCTTGAGCGCTTTTGCTGCTGGAAAAGCTGCTGCCTTTAAGATGTTTGAAACAATTAAGAGGAAGCCAGAAATCGATGCTTATGATACAACTGGTCGGCAGCTTGAAGACATCGGTGGACATATAGAACTAAGGGAGGTTTACTTTAGTTATCCTACAAGACCAGACGAACTTATATTCAATGGATTTTCTCTTTCAGTACCAAGTGGCACTACGACAGCTTTGGTTGGAGAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACAGGCAGGTGAAGTTCTCATTGACAGTATCAACCTCAAAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTTAGCCAGGAACCAGTTCTCTTTACCTGTAGTATTAAAGAGAATATTGCCTATGGCAAGGATGATGCAACTGTTGAAGAAATCAGAGCATCAGCAGAACTAGCTAATGCTGCCAAATTTATAAATAGACTTCCTCAGGGACTGGACACAATGGTTGGTGAGCATGGAACTCAGCTTTCTGGGGGTCAAAAGCAAAGGGTTGCAATAGCAAGAGCGATTTTGAGAGACCCAAGAATCCTGCTTCTGGATGAAGCTACAAGTTCACTTGATGTTGAGTCTGAGAAAATTGTACAGGAAGCACTGGACAGAATGATGATAAACCGAACAACAGTCATTGTAGCCCACCGTTTAAGTACCATAAGGAATGCTGATAGCATTGCTGTTATTCATCAAGGAAAAATAGTTGAAAAAGGTTCACATGCCGAACTCACCAATGATCCCACTGGAGTCTATAGCCAGCTCATTAGACTGCAGGAAATTAAAGGGTCAGAACAAAATGCTTCATATGACACAGACAAGATAGAAAGTCCAGTGCTTTCTGGTAGACAATTAAGTCAAAGATCTTCCTTACGATCTATAAGCCAAAGGTCAGCAGAAGTTGGAAGCAGTGGTTGCAACTCTTTCTCAGAATCACATGTTGTTCCCCCAACGATTAGCTTGGATCTTTCAGGCAGAGGATCTCAAGCACTTCCTGCAACAGTTTCTTCACCAGCGCAAGTGCCACTCTCTCGCCTGGCATATTTAAACAAGTCCGAGATTCCAGTCTTGTTTATAGGGACTCTAGCTGCAGTAGTAAGTGGACTATTAACACCCATTATTGCACTCTTCGTTTCCAAAATGATAAGTATTTTCTATGAGCCAGTAGATGAACTTCGGAAAGATTCAAAGCTTTGGGCATTACTATTTGTTGCAATTGGTGCGGTATCATTTATCACAGCTCCTTGTAGATTCTACTTTTTTGGTGTTGCCGGCGGTAAGTTGATCAAAAGGATTAGGAAAATGTGTTTTGAGAAAGTTGTTCACATGGAAGTTAGCTGGTTCGATGAAGCTGAACATTCAAGTGGAGCAATTGGAGCAAGGCTCTCTTCTGATTCAGCTGCTGTTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTAGTTCAAAATGTTGCTACAGTTGTCGGCTGTTTGGTAATTGCGTTTGAAGCAAGCTGGCAGCTTGCTCTTATAGTGCTAGCTTTGGCACCGTTATTAGGACTAAATGGCTACCTGCAATTCAAGTTCATAACAGGATTCAGCGCAGATACAAAGAAACTGTACGAGGAAGCAAGTCAAGTCGCAAGTGATGCTGTAGGGAGTATAAGAACTGTTGCCTCTTTCTGTGCTGAAAAGAAGGTGATGGAATTGTACCAGAAAAAGTGTGAAGGACCAATTAAAACAGGCATAAGGCGAGGGATAATAAGTGGAATTGGTTATGGGATATCATTCTTCATGCTTTACACAGTTTATGCATGCAGTTTTTATGCTGGAGCTCGACTTGTAAAGGATGGAAAATCAACATTCTCAGATGTTTTCCGTGTCCTTTTTGCACTCAGCATGGCAGCTATGGGAATCTCCCAATCTGGCTCTTTGGTCCTTGATTCTGCTAAATCAAAAAGTGCTGCCGCTTCTGTATTTGCTATTCTTGATCGAAAGTCACAAATTGACCCAAGTGATGACTCTGGATTGACGTTGGAAGAAGTAAAGGGAGAGATTGAATTTAAAAATGTTAGTTTCAAGTATCCCACCAGACCTGATGTTCAAATATTGAGAGATCTTTGCTTGACTATTCATAGTGGCAAGACAGTTGCACTGGTTGGGGAAAGTGGAAGTGGAAAATCAACACTGATCTCATTGTTGCTGAGGTTTTACGATCCAGACTCAGGTCACATTACACTGGATGGAAAAGAAATAAAAAACATGCAAATTAAATGGCTAAGACAGCAGATGGGTCTGGTGAGCCAAGAGCCTGTGCTGTTTAATGATACCATCCGAGCCAATATTGCATATGGCAAAGGAGGGGATGCAACAGAGGCAGAAGTTATAGCTGCAGCAGAACTGGCAAATGCTCACAACTTCACCAGTAGTTTGCAGGAGGGTTATGACACAATAGTTGGGGAAAGAGGGATTCAGCTATCTGGAGGGCAGAAACAACGAGTGGCAATTGCACGAGCAATAGTGAAGAATCCAAAAATATTACTACTAGATGAGGCGACTAGTGCACTTGATGCAGAGTCTGAGAAAGTGGTTCAGGATGCACTAGAGCGTGTTATGGTGAACCGAACTACAGTAGTAGTGGCTCATAGGCTATCTACTATAAAGGGTGCGGATTTAATTGCAGTAGTAAAAAATGGTGTGATAACAGAGAAGGGAACACATGAATCTTTACTGAGCAAGGAAGGTGATTATGCTTCCTTAATAGCATTGCACACGAGTGCTTCTACATTCTAG 2880 0.4222 MAVLTGSASLGQASPSLSAFAAGKAAAFKMFETIKRKPEIDAYDTTGRQLEDIGGHIELREVYFSYPTRPDELIFNGFSLSVPSGTTTALVGESGSGKSTVVSLIERFYDPQAGEVLIDSINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDDATVEEIRASAELANAAKFINRLPQGLDTMVGEHGTQLSGGQKQRVAIARAILRDPRILLLDEATSSLDVESEKIVQEALDRMMINRTTVIVAHRLSTIRNADSIAVIHQGKIVEKGSHAELTNDPTGVYSQLIRLQEIKGSEQNASYDTDKIESPVLSGRQLSQRSSLRSISQRSAEVGSSGCNSFSESHVVPPTISLDLSGRGSQALPATVSSPAQVPLSRLAYLNKSEIPVLFIGTLAAVVSGLLTPIIALFVSKMISIFYEPVDELRKDSKLWALLFVAIGAVSFITAPCRFYFFGVAGGKLIKRIRKMCFEKVVHMEVSWFDEAEHSSGAIGARLSSDSAAVRALVGDALGLLVQNVATVVGCLVIAFEASWQLALIVLALAPLLGLNGYLQFKFITGFSADTKKLYEEASQVASDAVGSIRTVASFCAEKKVMELYQKKCEGPIKTGIRRGIISGIGYGISFFMLYTVYACSFYAGARLVKDGKSTFSDVFRVLFALSMAAMGISQSGSLVLDSAKSKSAAASVFAILDRKSQIDPSDDSGLTLEEVKGEIEFKNVSFKYPTRPDVQILRDLCLTIHSGKTVALVGESGSGKSTLISLLLRFYDPDSGHITLDGKEIKNMQIKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEVIAAAELANAHNFTSSLQEGYDTIVGERGIQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALERVMVNRTTVVVAHRLSTIKGADLIAVVKNGVITEKGTHESLLSKEGDYASLIALHTSASTF 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00416 959 Gene3D ABC transporter type 1, transmembrane domain 609 712 IPR036640 GO:0005524|GO:0016020
Vian1g00416 959 Gene3D ABC transporter type 1, transmembrane domain 362 516 IPR036640 GO:0005524|GO:0016020
Vian1g00416 959 Gene3D ABC transporter type 1, transmembrane domain 1 316 IPR036640 GO:0005524|GO:0016020
Vian1g00416 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 295 IPR027417 -
Vian1g00416 959 FunFam ABC transporter B family member 1 47 296 - -
Vian1g00416 959 ProSitePatterns ABC transporters family signature. 855 869 IPR017871 GO:0005524|GO:0016887
Vian1g00416 959 Gene3D - 713 954 IPR027417 -
Vian1g00416 959 CDD ABC_MTABC3_MDL1_MDL2 715 950 - -
Vian1g00416 959 FunFam ABC transporter B family member 1 373 681 - -
Vian1g00416 959 Pfam ABC transporter 76 224 IPR003439 GO:0005524
Vian1g00416 959 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 57 293 IPR003439 GO:0005524
Vian1g00416 959 Pfam ABC transporter transmembrane region 393 665 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00416 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 704 951 IPR027417 -
Vian1g00416 959 CDD ABC_6TM_Pgp_ABCB1_D2_like 383 698 - -
Vian1g00416 959 ProSitePatterns ABC transporters family signature. 196 210 IPR017871 GO:0005524|GO:0016887
Vian1g00416 959 CDD ABC_MTABC3_MDL1_MDL2 57 295 - -
Vian1g00416 959 Pfam ABC transporter 733 883 IPR003439 GO:0005524
Vian1g00416 959 SUPERFAMILY ABC transporter transmembrane region 382 699 IPR036640 GO:0005524|GO:0016020
Vian1g00416 959 Gene3D - 47 296 IPR027417 -
Vian1g00416 959 FunFam ABC transporter B family member 1 705 954 - -
Vian1g00416 959 FunFam ABC transporter B family member 9 682 704 - -
Vian1g00416 959 PANTHER ABC TRANSPORTER B FAMILY 376 952 IPR039421 -
Vian1g00416 959 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 394 680 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian1g00416 959 SMART AAA_5 84 270 IPR003593 GO:0016887
Vian1g00416 959 SMART AAA_5 742 935 IPR003593 GO:0016887
Vian1g00416 959 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 715 952 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00416 Vian-Chr1 3816955 3820750 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00416 1 958 Calmodulin-binding Proteins AT2G36910 46.488 0.0 819
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00416 K05658 - gmx:100799760 1522.68