Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian1g00414 | ATGGAAGGGAATACCAGTTTGAACGAAGTTACTAGCAACAATCAAGAATCATCCAGGAAGTCTAAAGATGAACCCGTCAAAACAGTACCATTATACAAGCTTTTCTCATTTGCCGATTCTTTGGATCACTTGTTGATGTTGGTGGGCACTGTGGGCGCCGTGGGGAATGGAATCTCCATGCCCTTGATGACTTTGATATTTGGGAGCATGATCAATGCATTTGGGGGATCCAGTACCACGGCCGAAGTTGTTGATGAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTGGCTGTGGGTACCTTTGCTGCATCACTTTTGCAGTTGGCATGCTGGATGATCACGGGAGAAAGACAAGCTGCAAGAATTAGAGGCTTATACCTTCAAACAATTCTGAGGCAAGATGTAACCTTCTTTGATAAAGAGACTAACACTGGAGAGGTTATTGGAAGGATGTCAGGTGATACTGTTCTAATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTTATTCAGTTAATGGCAACTTTCATTGGAGGGTTTGTTGTATCGTTCATCAAGGGGTGGCTTCTAACTGTTGTCATGCTATCTAGTATTCCACTTCTTGTCTTGTCCGGGGCTCTGATGAGCCTGGTTATTACAAAAGCGTCATCCAGGGGACAAACTGCTTATTCCAAAGCTTCAAGTGTTGTAGAACAGACAATTGGCTCTATCCGGACTGTTGCATCATTCACTGGGGAGAGGCTAGCAATAGCTAAATACAATCAGTCCTTGATCAAGGCTTACGTCAATGGAGTGCACGAGGCAGTAGCTTCTGGTTTGGGTTTTGGGATCCTATACTTTGTCTTTATATGCAGCTACGCTTTGGGCATTTGGTTTGGCGCGAAAATGATCATCGAGAAAGGATACACAGGAGGAGAGGTTGTGACTGTTATATTTGCTGTATTGACTGGCTCCATGTCTCTAGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTGAAAGGAAGCCATTAATCGATGCCTATGACACTAATGGTCGGAAGCTTGAAGACATTCGTGGCGACATAGAGCTTAGGGAAGTCTGCTTTAGTTATCCTACGAGACCTGATGAACTAATATTCAATGGATTTTCGCTTTCAATACCGAGTGGCACTACTGCAGCTTTGGTGGGACAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACATTCCGGTGCAGTACTTATTGATGGTATCAATCTCAAAGAATTTCAACTGAAATGGATCAGACAGAAAATTGGCCTGGTCAGCCAGGAACCCGTTCTCTTTACTTGTAGCATTAAAGAGAATATTGCCTATGGCAAGGATGGAGCAACTGATGAAGAAATCAGAGCTGCCGCAGAACTTGCTAATGCTGCCAAATTTATAGACAAACTACCTCAGGGACTAGATACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGGGGTCAAAAGCAGAGAGTGGCGATAGCAAGAGCGATTTTGAAAGACCCAAGAATCCTACTTCTGGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGAATTGTACAAGAGGCATTGGACAGAATAATGATAAACAGAACAACTGTCATTGTTGCCCACCGTTTGAGTACTATAAGGAATGCCGATACCATTGCTGTTATCCATCAAGGAAAAATAGTTGAAAGAGGTCCACACGATGAGCTCACCAAGGATCCCGAAGGAGCCTATAGCCAGCTCATCAGACTACAAGAAATTAAGAAGTCAGAACAGAACGCAGAAGACAGAGAAAAACAAGATAGTATATCGCAGTCTGGAAGACTTTCAAGTAAAAGGTCTTCTTTGTTACGATCTATAAGCCTAGAGTCAATGGGAGTTGGAAACAGTGGTCATCGTTCACTCTCAGCATCATTTGGTCTGCCCACATCTGCTGGCTTTATAGAACCAGTCGATGAGGGGTCTCAAGATCATCCTATAAAATCTTCTTCACCACCAGAAGTGCCTCTTCGTCGCCTGGGTTACCTAAACAAGCCAGAATTTCCAGTGTTACTGATGGGGACTGTAGCTGCAATGATAGCTGGAGCAATCTTACCTGTTTTTGGACTGTTACTCTCCAAAATGATAGATATTTTCTATGAACCACATGATGAACTTCGTAAAGATTCAAAAATTTGGGCATTAGTATTTGTTGCGGTCGGTGTGGTATCACTCCTGGTTTATCCAGCTAGATTCTACCTTTTTGGTGTTGCTGGTGGTAAGTTGATCCAGAGGATCCGGAAAGCATGTTTTGAGAAAGTAGTTCACATGGAGGTAAGTTGGTTTGATGAAGCTGAGAATTCGAGTGGAGCAGTTGGAGCAAGGCTCTCAACTGATGCAGCTTCCGTCAGAGCATTGGTTGGGGATGCACTTGGTTTGCTGGTTCAGAATATTGCCTCAGCAATAACTGGATTGGTAATTGCCTTTGAATCAAGCTGGCAGCTTGCTCTTATAATCCTTGCTATGGTGCCTCTACTTGGACTAAACGGATTTTTTCAAGTCAAGTTCTTGAAAGGATTCAGTGCAGATTCAAAGAGAATGTATGAGGAAGCAAGTCAAGTGGCGAATGATGCTGTGGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGATTTATACCGGGGAAAATGTGAAGGGCCAATTAAGACGGGCATAAGGCAAGGGATAATCAGTGGAGTTAGCTTTGGAATATCATTTTTTGTGCTGTACGCAGTTTATGCAGCAAGTTTTTATGCCGGAGCTCGACTGGTAGAGGATGGCAAAACATCGTTCACAGATGTTTTCCGGGTTTTTTTTGCTCTCAGTTTTGCAGCAATAGGAATCTCTCAATCTGGCTCTTTGGTTCCTGATTCAGCCAAAGCAAAAACTGCTGCTGCTTCCATATTTGCCATCATTGACCGAAAGTCACAAATAGACTCAAGTGATGACTCTGGAATAACATTGGAAGAAGTGAAGGGAGAGATTGAGCTTAAGCATGTCAGTTTCAAGTATCCTACAAGACCCGATGTTCAGATATTCAGAGATCTTAGTTTGACCATTCATAGCGGCAAGACAGTTGCACTGGTTGGAGAAAGCGGAAGTGGAAAATCAACAGTGGTGTCATTGTTACAAAGATTCTATGATCCAGACTCAGGTCACATTACACTGGACGGAAAGGAAATTCAAAGCATGCAAGTTAAATGGCTAAGACAGCAGATGGGTCTGGTGAGCCAAGAGCCTGTGCTGTTTAATGACACCATCCGAGCCAATATTGCATATGGCAAAGGAGACGCAACAGAGGCAGAAATCATAGCTGCAGCAGAATTGGCAAACGCCCACAAGTTCATAAGTAGTTTGCAGAAGGGTTATGACACGGTGGTAGGTGAGAGAGGAGTTCAGTTATCTGGGGGACAAAAGCAGCGAGTGGCAATAGCACGAGCTATAGTAAAGAATCCAAAAATATTACTGCTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAGAAAGTGGTTCAGGATGCACTTGACCGTGTGATGGTGGACCGAACCACAATAGTAGTGGCTCATAGGTTATCCACTATTAAGGGTGCTGATTTAATCGCTGTAGTTAAGAATGGAGTGATAGCAGAGAAGGGAAAGCATGAAGCATTACTGAAGAAGGGTGGTGACTATGCTTCTTTAGTTGCATTGCACACAAATGCTTCTACTTCTTAG | 3816 | 0.4353 | MEGNTSLNEVTSNNQESSRKSKDEPVKTVPLYKLFSFADSLDHLLMLVGTVGAVGNGISMPLMTLIFGSMINAFGGSSTTAEVVDEVSKVSLKFVYLAVGTFAASLLQLACWMITGERQAARIRGLYLQTILRQDVTFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGQFIQLMATFIGGFVVSFIKGWLLTVVMLSSIPLLVLSGALMSLVITKASSRGQTAYSKASSVVEQTIGSIRTVASFTGERLAIAKYNQSLIKAYVNGVHEAVASGLGFGILYFVFICSYALGIWFGAKMIIEKGYTGGEVVTVIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIERKPLIDAYDTNGRKLEDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPHSGAVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVERGPHDELTKDPEGAYSQLIRLQEIKKSEQNAEDREKQDSISQSGRLSSKRSSLLRSISLESMGVGNSGHRSLSASFGLPTSAGFIEPVDEGSQDHPIKSSSPPEVPLRRLGYLNKPEFPVLLMGTVAAMIAGAILPVFGLLLSKMIDIFYEPHDELRKDSKIWALVFVAVGVVSLLVYPARFYLFGVAGGKLIQRIRKACFEKVVHMEVSWFDEAENSSGAVGARLSTDAASVRALVGDALGLLVQNIASAITGLVIAFESSWQLALIILAMVPLLGLNGFFQVKFLKGFSADSKRMYEEASQVANDAVGSIRTVASFCAEEKVMDLYRGKCEGPIKTGIRQGIISGVSFGISFFVLYAVYAASFYAGARLVEDGKTSFTDVFRVFFALSFAAIGISQSGSLVPDSAKAKTAAASIFAIIDRKSQIDSSDDSGITLEEVKGEIELKHVSFKYPTRPDVQIFRDLSLTIHSGKTVALVGESGSGKSTVVSLLQRFYDPDSGHITLDGKEIQSMQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGDATEAEIIAAAELANAHKFISSLQKGYDTVVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLKKGGDYASLVALHTNASTS | 1271 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian1g00414 | 1271 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 697 | 1011 | - | - | |
| Vian1g00414 | 1271 | Pfam | ABC transporter transmembrane region | 706 | 977 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Vian1g00414 | 1271 | Pfam | ABC transporter transmembrane region | 46 | 320 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Vian1g00414 | 1271 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Vian1g00414 | 1271 | FunFam | ABC transporter B family member 1 | 1018 | 1266 | - | - | |
| Vian1g00414 | 1271 | CDD | ABC_MTABC3_MDL1_MDL2 | 369 | 607 | - | - | |
| Vian1g00414 | 1271 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 47 | 334 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Vian1g00414 | 1271 | MobiDBLite | consensus disorder prediction | 611 | 625 | - | - | |
| Vian1g00414 | 1271 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 707 | 993 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Vian1g00414 | 1271 | CDD | ABC_MTABC3_MDL1_MDL2 | 1028 | 1262 | - | - | |
| Vian1g00414 | 1271 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Vian1g00414 | 1271 | PANTHER | ABC TRANSPORTER B FAMILY | 11 | 762 | IPR039421 | - | |
| Vian1g00414 | 1271 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1028 | 1264 | IPR003439 | GO:0005524 | |
| Vian1g00414 | 1271 | Gene3D | - | 367 | 620 | IPR027417 | - | |
| Vian1g00414 | 1271 | FunFam | ABC transporter B family member 9 | 33 | 365 | - | - | |
| Vian1g00414 | 1271 | Pfam | ABC transporter | 388 | 536 | IPR003439 | GO:0005524 | |
| Vian1g00414 | 1271 | Gene3D | - | 1018 | 1270 | IPR027417 | - | |
| Vian1g00414 | 1271 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 359 | 607 | IPR027417 | - | |
| Vian1g00414 | 1271 | Pfam | ABC transporter | 1047 | 1195 | IPR003439 | GO:0005524 | |
| Vian1g00414 | 1271 | MobiDBLite | consensus disorder prediction | 611 | 632 | - | - | |
| Vian1g00414 | 1271 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 46 | 330 | - | - | |
| Vian1g00414 | 1271 | FunFam | ABC transporter B family member 9 | 995 | 1017 | - | - | |
| Vian1g00414 | 1271 | FunFam | ABC transporter B family member 1 | 359 | 608 | - | - | |
| Vian1g00414 | 1271 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1017 | 1264 | IPR027417 | - | |
| Vian1g00414 | 1271 | SUPERFAMILY | ABC transporter transmembrane region | 33 | 353 | IPR036640 | GO:0005524|GO:0016020 | |
| Vian1g00414 | 1271 | SUPERFAMILY | ABC transporter transmembrane region | 691 | 1008 | IPR036640 | GO:0005524|GO:0016020 | |
| Vian1g00414 | 1271 | SMART | AAA_5 | 1055 | 1247 | IPR003593 | GO:0016887 | |
| Vian1g00414 | 1271 | SMART | AAA_5 | 396 | 589 | IPR003593 | GO:0016887 | |
| Vian1g00414 | 1271 | ProSitePatterns | ABC transporters family signature. | 508 | 522 | IPR017871 | GO:0005524|GO:0016887 | |
| Vian1g00414 | 1271 | FunFam | ABC transporter B family member 1 | 686 | 994 | - | - | |
| Vian1g00414 | 1271 | ProSitePatterns | ABC transporters family signature. | 1167 | 1181 | IPR017871 | GO:0005524|GO:0016887 | |
| Vian1g00414 | 1271 | Gene3D | ABC transporter type 1, transmembrane domain | 92 | 1002 | IPR036640 | GO:0005524|GO:0016020 | |
| Vian1g00414 | 1271 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 369 | 605 | IPR003439 | GO:0005524 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian1g00414 | Vian-Chr1 | 3791608 | 3796764 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian1g00414 | 20 | 1265 | Calmodulin-binding Proteins | AT2G36910 | 44.940 | 0.0 | 1078 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian1g00414 | K05658 | - | gmx:100800293 | 2088.92 |