Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00409 ATGCGACTTGGGAAATACGAGTTGGGTAGGACCCTGGGTGAAGGCAATTTTGGCAAAGTCAAGTTCGCCAAGAACACTGATTCTGGTCAACCTTTTGCTGTTAAGATCATCGAGAAGAACAAGATCATCGACCTAAACATAACCAATCAGATAAAGAGGGAAATAGCCGCCTTAAAGCTCCTCAGACATCCCAACGTTGTTAGATTATACGAGGCAGATGGATTGCTGCATACAACTTGTGGAAGTCCTAATTATGTTGCTCCTGAGGTTCTTGCTAATAGGGGCTATGACGGTGCAACATCAGATACATGGTCATGTGGTGTTCTATTATATACAATTCTAACTGGATGTTTACCTTTTGATGACAGAAATATGGTAGTTCTCTATCAGAAGATTTTCAAAGGAGATGTTCGGATACCAAAATGGCTATCAGCAGGTGCACAAGACTTGATAAAGAGGATTCTTGATCCAAATCCTGAAAAACGGATAACAATGGCTGGGATCAAAGAAGATCCGTGGTTTAAGAAGGGTTATGTTCCAGCAAATGCTGAAGATGAGGATGTATACGTTGACAATGAAGCAGTTTCCATGCATGAAGCAGAACAGAGGAATTCAGGATCATCACCAGCCCTTATCAATGCATTTCAGTTGATAGGGATGTCTTCGTGCCTAGACCTCTCTGGCTTCTTTGAGAAAGAGGTGAGCATGAAATTCAGGATCACCAACCCTAATCAGTGCATTTCAATTTCTACTGATACAAAGTTTGTGCATAGTATTTCCTGTGTCTTTAAACAGTCACCACTTCTTACAGAATTTAACTCAGATTTATGCACAATGTGGTTTGAGAAACAGGGTGTTTCTGAGAGAAAGATAAGATTTACATCAAATCTTTCAGTTAAAGATCTGATTGAGAGGATTGAGGACACTGTGACAGATATGGAATTTATAGTCCAGAGGAAAAATGACAAATTGAAAGTGATTTGGGAGAACAAGGTGCACAAAACTACTGGATGCCTTTCAGTGGCCGTAGAGGTGTTTGAAATAAGCCCATCACTGTCCGTTGTAGAATTAAGGAAGTCTTGTGGTGACACTTCTGTATATAAACAGTTATGCAATAAATTATTGAATGATTTGAGTGTTCCCCCAAGCAAGTGCTTGTGA 1161 0.4005 MRLGKYELGRTLGEGNFGKVKFAKNTDSGQPFAVKIIEKNKIIDLNITNQIKREIAALKLLRHPNVVRLYEADGLLHTTCGSPNYVAPEVLANRGYDGATSDTWSCGVLLYTILTGCLPFDDRNMVVLYQKIFKGDVRIPKWLSAGAQDLIKRILDPNPEKRITMAGIKEDPWFKKGYVPANAEDEDVYVDNEAVSMHEAEQRNSGSSPALINAFQLIGMSSCLDLSGFFEKEVSMKFRITNPNQCISISTDTKFVHSISCVFKQSPLLTEFNSDLCTMWFEKQGVSERKIRFTSNLSVKDLIERIEDTVTDMEFIVQRKNDKLKVIWENKVHKTTGCLSVAVEVFEISPSLSVVELRKSCGDTSVYKQLCNKLLNDLSVPPSKCL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00409 386 SUPERFAMILY Protein kinase-like (PK-like) 2 184 IPR011009 -
Vian1g00409 386 CDD CIPK_C 213 375 - -
Vian1g00409 386 Gene3D Kinase associated domain 1, KA1 271 380 - -
Vian1g00409 386 Gene3D Kinase associated domain 1, KA1 215 266 - -
Vian1g00409 386 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 71 - -
Vian1g00409 386 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Vian1g00409 386 Pfam Protein kinase domain 6 72 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00409 386 Pfam Protein kinase domain 76 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00409 386 Pfam NAF domain 209 318 IPR004041 GO:0007165
Vian1g00409 386 Gene3D Phosphorylase Kinase; domain 1 1 72 - -
Vian1g00409 386 ProSiteProfiles NAF domain profile. 207 231 IPR018451 GO:0007165
Vian1g00409 386 FunFam Aurora kinase A 1 73 - -
Vian1g00409 386 Gene3D Transferase(Phosphotransferase) domain 1 73 214 - -
Vian1g00409 386 ProSiteProfiles Protein kinase domain profile. 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00409 Vian-Chr1 3728565 3732547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00409 70 378 CBL-interacting serine-threonine protein kinases AT1G48260 54.019 1.78e-105 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vian1g00409 NAF 1.8e-12 CL0573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00409 K07198 - gmx:100777468 405.601