Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00404 ATGGCATCTGATCTAAGTTCGGGGCTGTCCAAGGAAACGTCTGTATTTGGGTTGAAAGCATGGGAACTAATGGGGATACTGGTTGGGTTGTTCATTGTAATCATTCTTGTGGTGGTATCAATATGTCTTACTTCACGAAAGAAATCCAGAAGAGTCAATGGCATGCTTCCCCTTAGCCATATGCTATCTGTTTCAGATGAAATCAAGGAAATTAGAGTTGATCATGTTTCATCCAATAATCATCCTCAGAATGGAGCTTTTATGAGTCTGTATGACAGGTTTAGTGACAGAGACTCTGAAAAGGTTTTGATCCAACCAAAGAATGGGGAAAATAGCAGTCAATCGGGCTCATTCGTTCATCTTAAGAAAGATGATGGTGGCTCTCAATCAGGTGAAGAAAGTGGTGCCAAATCTGTTTCTACCTACAGGTCTTCTTCACATCCTATAACTGCACCATCTCCCTTGTCTGGTCTGCCTGAATTCTCTCACCTTGGATGGGGCCACTGGTTCACATTAAGGGACCTAGAACTTGCAACAAACAGGTTTTCCAAAGACAATGTGATTGGTGAAGGTGGATATGGAGTTGTTTATCAAGGCCAGTTAATTAATGGGAGCCCTGTGGCTGTTAAGAAGCTACTCAATAATCTAGGACAAGCTGAAAAGGAATTTAGAGTGGAAGTTGAGGCTATTGGCCATGTGCGACACAAGAATTTGGTTAGACTTTTGGGGTATTGCATTGAAGGGACTCACAGGTTGTTGGTTTATGAGTATGTTAACAATGGCAATTTAGAGCAATGGCTTCATGGAGCCATGAGGCAGTATGGTTTTCTTACTTGGGATGCTCGAATTAAAATTCTTCTTGGAACAGCTAAAGCGCTATCTTACTTGCACGAGGCAATTGAGCCAAAAGTTGTACATCGAGATATTAAATCAAGCAATATTCTAATTGATGATGATTTCAATGCCAAAATATCTGACTTTGGGCTTGCAAAGTTACTTGGTGCTGGAAAAAGTCATATCACAACTCGAGTAATGGGTACTTTTGGATATGTGGCTCCGGAATATGCCAATTCTGGCTTACTAAACGAGAAGAGTGATGTTTATAGCTTTGGGGTGTTGCTCCTCGAAGCAATCACAGGAAGGGACCCAGTGGATTATAGCCGACCAGCAACTGAGGTAAATTTGGTTGACTGGCTCAAGATGATGGTTGGGAATAGGCGTGCAGAAGAGGTGGTAGACCCTAACATTGAGACCAGGCCTTCAACAAGTGCCCTTAAACGTGCCCTTTTGACTGCTTTGAGGTGTGTTGATCCAGATTCTGAGAAAAGACCAAAGATGAGTCAAGTTGTCCGCATGCTTGAATCAGAGGAATATCCCATACCCCGAGAGGATCGAAGACGCCGGAAGAGTCAAACGGGGAATATGGAGGTGGAGGCTCAGAGGGAGATTTCTGATACAGAGAAGAGTGACACTCCAGATTCAAAGTCCAATGGCAGAAGGAACCAAAAGAAGTAG 1515 0.4304 MASDLSSGLSKETSVFGLKAWELMGILVGLFIVIILVVVSICLTSRKKSRRVNGMLPLSHMLSVSDEIKEIRVDHVSSNNHPQNGAFMSLYDRFSDRDSEKVLIQPKNGENSSQSGSFVHLKKDDGGSQSGEESGAKSVSTYRSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGVVYQGQLINGSPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQYGFLTWDARIKILLGTAKALSYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEAITGRDPVDYSRPATEVNLVDWLKMMVGNRRAEEVVDPNIETRPSTSALKRALLTALRCVDPDSEKRPKMSQVVRMLESEEYPIPREDRRRRKSQTGNMEVEAQREISDTEKSDTPDSKSNGRRNQKK 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00404 504 MobiDBLite consensus disorder prediction 131 151 - -
Vian1g00404 504 FunFam Putative receptor-like serine/threonine-protein kinase 258 469 - -
Vian1g00404 504 Pfam Protein kinase domain 183 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00404 504 CDD STKc_IRAK 188 454 - -
Vian1g00404 504 MobiDBLite consensus disorder prediction 105 151 - -
Vian1g00404 504 ProSitePatterns Protein kinases ATP-binding region signature. 188 211 IPR017441 GO:0005524
Vian1g00404 504 SMART serkin_6 182 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00404 504 FunFam Putative receptor-like protein kinase 164 257 - -
Vian1g00404 504 MobiDBLite consensus disorder prediction 105 119 - -
Vian1g00404 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Vian1g00404 504 ProSiteProfiles Protein kinase domain profile. 182 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00404 504 SUPERFAMILY Protein kinase-like (PK-like) 166 462 IPR011009 -
Vian1g00404 504 MobiDBLite consensus disorder prediction 454 504 - -
Vian1g00404 504 Gene3D Transferase(Phosphotransferase) domain 1 258 470 - -
Vian1g00404 504 PANTHER OS01G0323000 PROTEIN 5 482 - -
Vian1g00404 504 Gene3D Phosphorylase Kinase; domain 1 163 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00404 Vian-Chr1 3688687 3691576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00404 17 456 Trihelix Transcription Factor Family AT1G70460 40.000 1.76e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vian1g00404 Pkinase 6.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00404 - - gmx:100793499 924.465