Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00401 ATGGAGGCTGAGTTTGGGCGTAAGAATCAGTACTTGTATGGACCTGTGCTGTCAGGAATGAAGAAAGCTGTTGGGAATGGGAAGATGAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCACTGCTCAGCCTCTCAATTCAGTGCCATCAGACTGTAGGAGTCGCCAGTTTTTCCCACCACATCCTGAAATTCCTGCGAAAAAGGCCAATCTTGGAAACGATTTCTCTTCTTCTTTAATCAACCAAGGTGAGGGAAAAAAGGAATTGGAGAAAAGGAGGAGGCGTGTTATAGGGGAAGGTGAAGGGGAGGGGATGAATGATGAAGGTGGTTCTCTTAGTTTGAACCTTGGGGGTCAGGGTTACCCTTTCATGGTGGAAGGAGAGGAAAAAAGTGGAAAGAAGACAAAGGTAATTGGGACTACTACTGCTGCTGCTACCATCTCTAACCGTCCTGTTTGTCAGGTGCAGGATTGTACGGCTGATCTTGGTAATGCCAAGGATTACCACCGTCGGCACAAGGTTTGTGATGTTCATTCTAAGGCCACTGTGGCACTAGTGGGAGATGTTATGCAACGTTTCTGTCAACAGTGTAGCAGGTTTCATGTCCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTGGCAGGCCATAACAGGAGGAGGAGGAAAACTCATCCCGATGTTACTGTTGTTAACGAAGGATCTCATAACGATGGAAGGGGCAGTAGCTATCTATTGATGAGTCTGTTACGGATACTGACCAATTTGCATACAAATGGCTCAGATCAGACAAGGAACCAGGATATACTCTCTCATCTTCTGAGGAACTTGGAAAGTCTGGCTGCTCCAAATAATGATAGAACTTTAGCCTCCTTATTGGAGAACTCTAAAGGTTTGTTAAATGCTGGGACACCTGGAGGTGCTCATGATGAACCCAACCTTAATTCAAACACTCCTGAAGCTTCCAGACCGTCTGGTTCTTCCATTCAGATTGATAATGGCTTCATCAGTCAGGACCCTCCAATATCCATGGCACAGTGTGAAACAAGGCCTACTAATGGTGGAGTAGAAAATTTGAGACCACCTTCAGGTGATGGTGGAATAGAAAATTTGAGACCACCTTCAGGAGCACCATTCTCAAGTATAAGTCAATCAAAGGGAAATCTTCCATGCCAATTAACTGCTACTGAGACTCCACTTAGAAGGAACAACTTAAATAACGTTGACCTGAATAACGTATACAGTGATGTGCAGAATACTAATGAGAATCATAAGAAGCCTTATCCTCATGTAGCATCAGAGATGGGATCTAGTGATCTTCCCTCATGGTTGCAATGTGCTTCTCTCAAATCAAGTCCTCCACAGACTAGCAGAAACTCAGATTCAACCTCTAACCAATCACCATCTGGTTCCAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAACTTTTTGGAAAGGATCCAAGTAATTTTCCCCTTCTTCTTCGTTCACAGATTCTCAACTGGTTATCCCACAGTCCCACCGAGATAGAGAGCTATATAAGGCCAGGTTGTATCATATTAACGATATATCTTTGTCTTGAAAAATCTGCATGGGAAGAGCTCTGCTGTAATCTAGGATCCAGCTTGAGAAAGCTTCTTAGCTCGTCAAATGATACATTTTGGAGAACAGGGTGGGTATTTGCAAGGGTGCAGCACTCTGTGGCTTTTCTGTATAACGGTCAGGTAGTCTTAGATGTGCCCTTGTGTCTCAAAAGCTCACATCATTGTACGATTTCATGCATTAAACCACTTGCTGTTCCTGCAAGTGCTAGGGCTCACTTTATTGTGAAAGGTTGCAACCTTTCCCAGTCTAGTACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATGTGGTACATGCTAGTTGTCATGATTTGATTGGTGAAGCTGATGAATCCATTCAGCATCTCAACTTCTCTTGTCATATACCAAACGTAACTGGGAGGGGTTTTATTGAGGTGGAAGACCATTGTCTTAGAAGCTGTTCCTTTCCATTTATAGTTGCAGAGAAAGAAGTCTGTTCAGAGATCTGCAAGCTGGAGAATGTGATTGAGGCTGCTGAAACCACTAATGATTTCCAGATTAAAAACCAAAAAATGGAAGAAAAGACTCAAGCTCTTCATTTCTTGCAAGAAATGGGTTGGCTTCTTCATAGAAGTCGTGTGAAAGTTAGGCTAGGTCCCACGGCTCCTATCCATGATCTCTTCCAATTTAATCGGTTCACGTGGCTTGTTGACTTCTCTATGGACCATGGTTGGTGTGCTGTGATGAAAAAACTATTGGATATTATATTTGATGGGGGTGTTGATGCAGGAGAACAGGCCTCCATTGAGCTTGCATTGTTAGACATGAGTCTTCTACACAAAGCCGTGAAGAGAAACAATAGACCTATGGTAGAACTACTATTAAGATTTGTGCCAGTTAAAACATCAGATGGTGCTGACAGTGAGGTGAAGCAAGTTGATAAGGCATCCGAAAGATTCTTATTTAGACCTGATACTGTTGGGCCAGCTGGATTGACTCCTCTTCATGTTGCAGCAACTATGAGAGGCTCAGAGAACGTGTTGGATGCATTAACTGATGATCCAGGAATGGTAGGAATTGAAGTATGGAAAAGTGCCCGAGATAGTGCAGGTTTGACCCCTAACGACTATGCATGTCTTAGGGGCTATTACTCTTACGTTCAACTTGTCCAGAGGAAGACAAACAAAAAAGGTGAAAGACTACATGTGGTTGATATCCCTGGCACTGTCGCAGACAGTGGTATAAGAAAGCAGAAGCAATCAGGTAAAGTTTGTAGTTTACAGACAGAGAAGATTGAAAGCACAGAAATGGGAAGTAACTGCAGGGTGTGCCAGCAGAAGTTGGTTTATGGTGGCATGAGAACTGGTGTGGTTTATAGGCCAGTCTTGCTGTCCATGGTGGCCATAGCAGCTGTGTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCTAGAGTTTACTATGTGTTCCAGCCTTTCAACTGGGAATCATTGGAGTATGGAACAATATAA 3108 0.4347 MEAEFGRKNQYLYGPVLSGMKKAVGNGKMSLEWDLNDWKWDGDLFTAQPLNSVPSDCRSRQFFPPHPEIPAKKANLGNDFSSSLINQGEGKKELEKRRRRVIGEGEGEGMNDEGGSLSLNLGGQGYPFMVEGEEKSGKKTKVIGTTTAAATISNRPVCQVQDCTADLGNAKDYHRRHKVCDVHSKATVALVGDVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDVTVVNEGSHNDGRGSSYLLMSLLRILTNLHTNGSDQTRNQDILSHLLRNLESLAAPNNDRTLASLLENSKGLLNAGTPGGAHDEPNLNSNTPEASRPSGSSIQIDNGFISQDPPISMAQCETRPTNGGVENLRPPSGDGGIENLRPPSGAPFSSISQSKGNLPCQLTATETPLRRNNLNNVDLNNVYSDVQNTNENHKKPYPHVASEMGSSDLPSWLQCASLKSSPPQTSRNSDSTSNQSPSGSSGEAQSRTDRIVFKLFGKDPSNFPLLLRSQILNWLSHSPTEIESYIRPGCIILTIYLCLEKSAWEELCCNLGSSLRKLLSSSNDTFWRTGWVFARVQHSVAFLYNGQVVLDVPLCLKSSHHCTISCIKPLAVPASARAHFIVKGCNLSQSSTRLLCALEGKYVVHASCHDLIGEADESIQHLNFSCHIPNVTGRGFIEVEDHCLRSCSFPFIVAEKEVCSEICKLENVIEAAETTNDFQIKNQKMEEKTQALHFLQEMGWLLHRSRVKVRLGPTAPIHDLFQFNRFTWLVDFSMDHGWCAVMKKLLDIIFDGGVDAGEQASIELALLDMSLLHKAVKRNNRPMVELLLRFVPVKTSDGADSEVKQVDKASERFLFRPDTVGPAGLTPLHVAATMRGSENVLDALTDDPGMVGIEVWKSARDSAGLTPNDYACLRGYYSYVQLVQRKTNKKGERLHVVDIPGTVADSGIRKQKQSGKVCSLQTEKIESTEMGSNCRVCQQKLVYGGMRTGVVYRPVLLSMVAIAAVCVCVALLFKSSPRVYYVFQPFNWESLEYGTI 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00401 1035 MobiDBLite consensus disorder prediction 456 485 - -
Vian1g00401 1035 MobiDBLite consensus disorder prediction 318 361 - -
Vian1g00401 1035 MobiDBLite consensus disorder prediction 308 396 - -
Vian1g00401 1035 SUPERFAMILY Ankyrin repeat 767 923 IPR036770 -
Vian1g00401 1035 Gene3D - 149 219 IPR036893 GO:0003677|GO:0005634
Vian1g00401 1035 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
Vian1g00401 1035 FunFam Squamosa promoter-binding-like protein 14 149 219 - -
Vian1g00401 1035 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 111 925 IPR044817 GO:0003677
Vian1g00401 1035 MobiDBLite consensus disorder prediction 222 245 - -
Vian1g00401 1035 SUPERFAMILY SBT domain 156 237 IPR036893 GO:0003677|GO:0005634
Vian1g00401 1035 MobiDBLite consensus disorder prediction 66 96 - -
Vian1g00401 1035 Gene3D - 699 929 IPR036770 -
Vian1g00401 1035 Pfam SBP domain 158 231 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00401 Vian-Chr1 3653925 3665260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00401 26 1034 SBP-box Gene Family AT3G60030 43.938 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vian1g00401 SBP 6.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00401 - - gsj:114419913 1598.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00401 1 3653925 3665260 Vian1g00401 1 3653925 3665260 ECH
Vian1g00401 1 3653925 3665260 Vian4g00428 4 4936623 4946259 PCT