Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00393 ATGTTTGGTGAAATTGAGGTTTCTGCTGAAGCTTTAGCAGGTAATGTGATACAGTGTCAGACTCCTTTGCACTCATCTGGCCGTGTACCATTCTATGTTACCTGCAGTAATAGGTTAGCTTGCAGTGAGGTCAGGGAATTTCAATTTGATGAACATCCAACCAAATGTTTAGGTCCTTTGGGTATTAAAATCTCACCAGAAGTTGAGGTCCGACTTCAAATACGACTTCTTAAACTAGTAGACTTGGGATCTGACAATAATTTGTTGAAGTGCTCTGTTTCTGGTTGTGAAAAATGTAAACTCAAGGGAATAATGTATTCCATGAGAGGTGATAGTGGAGTATTTAAAGAAACTTTCCAGATTGATGGAATTGATCATATAAACCCTAGAGATGTACTATTTCAGAGATTAATGAGAGACAAGCTTTATGAGTGGTTGATATACAAGGTTCATGAAGGAGGAAAAGGATCACATGTGTTGGATGCTGAGGGCCAAGGAGTAATACATTTAGCAGCTGCACTTGGTTATGTGTGGGCTATGGCCCCGTTGGTTGCTGCTGGTATCAGTCCTAACTTCAGAGACAATCGTGGAAGAACAGGACTCCATTGGGCTTCGTATTTTGGGAGAGAAGAAACTGTTATTGCTCTTGTCAAATTAGGCGCAGCACCAGGTGCTGTTGAGGATCCAACGTCAGCACTTCCTCCAGGTCAAACAGCTGCTGATTTAGCTTCAAGTAGAGGACATAAAGGCATTGCTGGGTATTTGGCCGAGGCAGATCTGATAAATCGATTATCTATACTGACTGTCAAGGAAAATGAGACTGGTAACATTGCCACAACCATAGCAACTGACAGTGCTTTTCAGTCTGTTGAAGATGATTCGTCTAATTTGACAATTTATGAGCAGCACTACCTCAAAGAGTCCCTTGCTGTGTTTCGAAAATCAGCTCATGCAGCTGCTTCAATCCTAGCAGCCTTTAGAGCAAGGTCATTCTGTCAGAGACAATTAGCCAAAAGTGGAAGTGATATTTCAGACTCAGTACTTGACATAGTTGCCGATTCTTTGAGCAAGGTACAGAACATGTATCACTTTGAGGATTATTTACATTTTGCAGCCTTAAAGATTCAAAAGAGATATCGTGGATGGAAAGGAAGAAAGGACTTTTTGAAGATACGCAACCGCATTGTAAAAATCCAGGCTCACATCAGAGGACACCAAGTTCAAAAGCAATACAAAAAAGTTGTGTGGTCTGTTAGCATTGTGGAAAAAGCAATACTTCGTTGGAGACGGAAAGGAGCTGGTCTGCGAGGATTCCGGGGAGGGCAGCCGGTTGGCATTGATGAATATGACTTTCTTAGCGTTGGGAGGAGACAGAAATCAGATGATGTAAAGAAAGCTCTCGATAGAGTCAAGTCCATGGTTCGTAACCCTGATGCAAGGGATCAGTATATGAGGCTCATCATGAAATACCAGAATTTTAAGATTGATGATCGCGGAAGCACTCAATCACGTGTCGATTAG 1521 0.4188 MFGEIEVSAEALAGNVIQCQTPLHSSGRVPFYVTCSNRLACSEVREFQFDEHPTKCLGPLGIKISPEVEVRLQIRLLKLVDLGSDNNLLKCSVSGCEKCKLKGIMYSMRGDSGVFKETFQIDGIDHINPRDVLFQRLMRDKLYEWLIYKVHEGGKGSHVLDAEGQGVIHLAAALGYVWAMAPLVAAGISPNFRDNRGRTGLHWASYFGREETVIALVKLGAAPGAVEDPTSALPPGQTAADLASSRGHKGIAGYLAEADLINRLSILTVKENETGNIATTIATDSAFQSVEDDSSNLTIYEQHYLKESLAVFRKSAHAAASILAAFRARSFCQRQLAKSGSDISDSVLDIVADSLSKVQNMYHFEDYLHFAALKIQKRYRGWKGRKDFLKIRNRIVKIQAHIRGHQVQKQYKKVVWSVSIVEKAILRWRRKGAGLRGFRGGQPVGIDEYDFLSVGRRQKSDDVKKALDRVKSMVRNPDARDQYMRLIMKYQNFKIDDRGSTQSRVD 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00393 506 Gene3D Immunoglobulins 1 55 IPR013783 -
Vian1g00393 506 SUPERFAMILY E set domains 1 49 IPR014756 -
Vian1g00393 506 ProSiteProfiles Ankyrin repeat profile. 196 228 IPR002110 GO:0005515
Vian1g00393 506 ProSiteProfiles IQ motif profile. 391 419 IPR000048 GO:0005515
Vian1g00393 506 Gene3D - 366 415 - -
Vian1g00393 506 ProSiteProfiles IQ motif profile. 368 397 IPR000048 GO:0005515
Vian1g00393 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 418 IPR027417 -
Vian1g00393 506 Gene3D - 134 260 IPR036770 -
Vian1g00393 506 FunFam Calmodulin-binding transcription activator 2 367 415 - -
Vian1g00393 506 Pfam IQ calmodulin-binding motif 371 388 IPR000048 GO:0005515
Vian1g00393 506 Pfam IQ calmodulin-binding motif 393 412 IPR000048 GO:0005515
Vian1g00393 506 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 493 - -
Vian1g00393 506 SMART iq_5 390 412 IPR000048 GO:0005515
Vian1g00393 506 SMART iq_5 367 389 IPR000048 GO:0005515
Vian1g00393 506 SUPERFAMILY Ankyrin repeat 153 258 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00393 Vian-Chr1 3575778 3578043 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00393 1 503 CAMTA Transcription Factor Family AT5G09410 44.234 1.15e-138 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00393 K21596 - gmx:100818336 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00393 1 3575778 3578043 Vian1g00393 1 3575778 3578043 ECH