Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00384 ATGATCGTGAGTCCGAAGATGGTAGCGGAAGCGGAAATTATCTGTCAGCAGTCCATTCCGATGTTGGACGTGAAGTATCATATTTGCGTTGCGCAAGAACACAACGTTGAGGTCGTGGTTTCGCCCAAATCGCCTTCACCTTCTGTTCCGATCTTTGGCCAAGCAGTGAATCACTCTGATTTCATTAAGCATTCCATTTCGGAGACCCCTGCGTCTAGTTTTGTTCCAAATGCGCGTTCTGGTAGCTATGCTGAGATTGGGCCGCGGGTTTCTATGGATGATGAACACATCTGTATTGACGATCTAGGTGCTCATCTTGGATTTGTGTTCAAGTACCCGATACGGAGTGCTTTTTATGCAGTTTTTGATGGTCATGGAGGACCTGATGCTGCTGCTTTTGTTAAGAGAAATGCTATGAAATTGTTTTTTGAAGATGCGGACATGCTGCAGACATATGATACTGATTCGTTCTTTCTAGAGAAGTTAGAGGATTCCCATAGGAGAGCTTTTCTACGGGCAGATATTGCCTTGGCTGATGAACAAACTGTTAGTAGTTCGTGTGGAACGACTGCATTGACTGCCCTTGTACTTGGAAGGCACTTGCTTGTTGCTAATGCTGGTGACTGCCGAGCAGTTCTTTGCCGGAGGGGTGTGGCTGTTGAGATGTCTAACGATCACAGGCCAAGTTTTCTGCCAGAACGGCTGAGGGTGGAGGGGGTAGGTGGATTTATTGATGATGGATACCTCAATGGTTATCTTTCAGTAACCCGTGCCCTTGGAGATTGGGACTTGAAATTTCCACTCGGTGCTGCATCTCCTCTTATTGCTGAGCCAGATGTACGACTGGCTACATTGACCGAGGAGGATGAGTTTTTGATCATTGGGTGTGATGGGATTTGGGATGTAATGTCTAGCCAAGTTGCAGTTAGTCTTGTTCGACGAGGATTAAGAAGGCATAATGACCCACAGCAGTGTGCTATGGAACTAGTCAAGGAAGCATTGCGCCTGCATACATCGGATAATCTCACTGTGATTGTTGTATGTTTATCACCCATTGAAAGCATTGTTGAATCATGTCCTCCCCAGAGGCGAAGATTCAAAGCCTGCAACCTGTCCGAAGAGGCCCGTAATAGGTTGAAGAGCCTTATTGAGCAAAATTGA 1161 0.4625 MIVSPKMVAEAEIICQQSIPMLDVKYHICVAQEHNVEVVVSPKSPSPSVPIFGQAVNHSDFIKHSISETPASSFVPNARSGSYAEIGPRVSMDDEHICIDDLGAHLGFVFKYPIRSAFYAVFDGHGGPDAAAFVKRNAMKLFFEDADMLQTYDTDSFFLEKLEDSHRRAFLRADIALADEQTVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGVAVEMSNDHRPSFLPERLRVEGVGGFIDDGYLNGYLSVTRALGDWDLKFPLGAASPLIAEPDVRLATLTEEDEFLIIGCDGIWDVMSSQVAVSLVRRGLRRHNDPQQCAMELVKEALRLHTSDNLTVIVVCLSPIESIVESCPPQRRRFKACNLSEEARNRLKSLIEQN 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00384 386 PANTHER PROTEIN PHOSPHATASE 2C 70 347 IPR015655 GO:0004722|GO:0006470
Vian1g00384 386 Pfam Protein phosphatase 2C 89 341 IPR001932 -
Vian1g00384 386 Gene3D - 59 352 IPR036457 -
Vian1g00384 386 SMART PP2C_SIG_2 94 349 IPR001932 -
Vian1g00384 386 SUPERFAMILY PP2C-like 72 351 IPR036457 -
Vian1g00384 386 ProSiteProfiles PPM-type phosphatase domain profile. 79 349 IPR001932 -
Vian1g00384 386 CDD PP2Cc 79 349 IPR001932 -
Vian1g00384 386 SMART PP2C_4 69 347 IPR001932 -
Vian1g00384 386 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
Vian1g00384 386 FunFam Probable protein phosphatase 2C 22 63 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00384 Vian-Chr1 3421111 3423016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00384 1 383 PP2C-type Phosphatase Gene Family AT1G48040 56.345 1.51e-147 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00384 K14803 - gmx:100775577 683.715