Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00363 ATGAACTACCACAATACGCGCCGGAGCCCTTCCGGTTTCCGCTCTGGCGCTGCCCCTAACCCCCGCGCCTTCGACAGTCCTCCACGTCGCTCTCCTGGAAGGGGAGGAGGATTCCGGCCGATGGGCGGAGAAGGTCCTGGGGAATTCGGATTCAACGGCCACCAGCCGCCGCCGCTGGTTGGCCAGAAACGAGGGTTTCCTGTCGCCGGGCGCGGAGGCGGTTCACCAGATCGTTTAGATGGTGGAAATTTTGCTAAGCTTTTTGTTGGATCTGTTCCCCGAACAGCTGTTGAAGATGATATTCGTCCATTGTTTGAGGAACATGGGAATGTGATTGAGGTTGCCCTCATCAAAGATAGAAAGACAGGACAACATCAAGGTTGTTGTTTTATAAAATATTCTACTGCAGAAGAAGCTGATCAGGCAATTAGAGCACTGCATAATCAACATACTCTTCCTGGAGGTGTTGGTCCTATACAAGTGCGATATGCTGACGGTGAACGGGAACGCCTTGGTGCAGTTGAGTTTAAGTTATTTGTGGGCTCTCTGAACAAGCAAGCTCCCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGTCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTCAAATACTCTCACAGAGATATGGCTGTGGCAGCTATTAATGATCTTGATGGACTCTACACAATGAGAGGTTGTGAGCAACCACTAATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGCCAAGGAGATTCCAGGGGTCAGGCCTTTGGAGGCCCAGGATTTGGTCCTAGATTTGATGCACCAGGTTCAAGACTTCCATCCAATGTTACAGATCCTATGGGCGATCGAATGCCTCCCCCTAATGCTTGGCGACCAATGCAACCCCCAAATATGGGGCCATCCACTAATGCTGGTGTTCATGGCATGGGGCCACCAATGCTTCCAAGATCTGGTGAAATGACATTGCCTACAAATGCAGGCGGTCCTATGACTGGCTTGGGAGGCCCCATAGATGGTCGTTTTCAAGTTCAGTCTATGCCATCAATGTCACAACAGAATTTCAATCAGTCCATGCCACAAATTCCGCCACAGAATCAACAAATATCACCCTTGCAGAAACCTATTCAATCATCACAGGAGTTGCCATCATCCCATCATTTGTACCCTCAAGCACCAGTTCCCTACCCACAAACATCTGTTAGACAGCATGGCCAGCCACATCTTCCTCCTTCTGCTGGTCCTCTTCAATCTCAGCAGATACATGGAGTAAGTGGACAGTTTCCAACTTCTCAACCGCAAACTCAACCAAATGCTTTGTCTGCTGCATTTCCTCAGGCTCCTCTTGACACCAGCATGCAATCTAATACTGCATTAGCTACAAATCAACAGCAAGTTCCTCCCTCCGTGCCACAACAGCCTATTCAGCAATCCCCTTCTCCCTTAGCCCAGATGCTGTCGCAACAGACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAACTGCAGATGATGCAGCCTTCTAGTCAAGCATTATCATTGCAGCAAAATGCAGAAGCTACTAAAAAGCATTCTCAATGGGTTGGGACTGTAGCACAACCAGTGGCCAGCACTCATGCAACTGCACCTGCTGCAGATGCCCCTTCATCCATACTTGCTACTTCAGCCTTACCAGCAATAAACCATAACTCGGCACTTGCCAAATGTAATTGGACAGAACATATATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCTGAGGAGTTGACGTTATATGAACAGCAACAGCAAAGGGTATCTGTTCAGCAGTCTCACGCTCAGTCACAACCTTCGGTACTACCTGCCCAGCAAATTCCACAGTTCCAACAGGTTCAGCCTCAGAGTCATCACCAAGGACAAGTTCTTCACCAGCAACAAGCACAACAGCCTCCTTTGTCCTCTTCATTCCAGCCATATGGCGTTACAGGCCCTCAAAATGTTCAGGAAGTTGGTTATAAACAGTTACAGCCAACTGTTATTTCAGCTGGTGATCCAGGACGTTACTTACAGGGTGTTCATTCTACACAAGAATTGATGTGGAAAAATAAGCCTTCAGGAGTATGA 2196 0.4791 MNYHNTRRSPSGFRSGAAPNPRAFDSPPRRSPGRGGGFRPMGGEGPGEFGFNGHQPPPLVGQKRGFPVAGRGGGSPDRLDGGNFAKLFVGSVPRTAVEDDIRPLFEEHGNVIEVALIKDRKTGQHQGCCFIKYSTAEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEFKLFVGSLNKQAPVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMAVAAINDLDGLYTMRGCEQPLIVRFADPKRPRQGDSRGQAFGGPGFGPRFDAPGSRLPSNVTDPMGDRMPPPNAWRPMQPPNMGPSTNAGVHGMGPPMLPRSGEMTLPTNAGGPMTGLGGPIDGRFQVQSMPSMSQQNFNQSMPQIPPQNQQISPLQKPIQSSQELPSSHHLYPQAPVPYPQTSVRQHGQPHLPPSAGPLQSQQIHGVSGQFPTSQPQTQPNALSAAFPQAPLDTSMQSNTALATNQQQVPPSVPQQPIQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALSLQQNAEATKKHSQWVGTVAQPVASTHATAPAADAPSSILATSALPAINHNSALAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLYEQQQQRVSVQQSHAQSQPSVLPAQQIPQFQQVQPQSHHQGQVLHQQQAQQPPLSSSFQPYGVTGPQNVQEVGYKQLQPTVISAGDPGRYLQGVHSTQELMWKNKPSGV 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00363 731 Gene3D - 80 170 IPR012677 -
Vian1g00363 731 FunFam Flowering time control protein FCA 172 262 - -
Vian1g00363 731 Pfam WW domain 591 617 IPR001202 GO:0005515
Vian1g00363 731 SMART ww_5 587 619 IPR001202 GO:0005515
Vian1g00363 731 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 166 IPR000504 GO:0003723
Vian1g00363 731 FunFam flowering time control protein FCA isoform X2 79 171 - -
Vian1g00363 731 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 246 IPR000504 GO:0003723
Vian1g00363 731 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 150 IPR000504 GO:0003723
Vian1g00363 731 MobiDBLite consensus disorder prediction 256 451 - -
Vian1g00363 731 Gene3D - 585 633 - -
Vian1g00363 731 ProSiteProfiles WW/rsp5/WWP domain profile. 592 619 IPR001202 GO:0005515
Vian1g00363 731 MobiDBLite consensus disorder prediction 652 684 - -
Vian1g00363 731 CDD WW 589 619 IPR001202 GO:0005515
Vian1g00363 731 PANTHER RNA BINDING PROTEIN 55 528 - -
Vian1g00363 731 MobiDBLite consensus disorder prediction 472 495 - -
Vian1g00363 731 MobiDBLite consensus disorder prediction 408 451 - -
Vian1g00363 731 SUPERFAMILY WW domain 591 624 IPR036020 GO:0005515
Vian1g00363 731 Gene3D - 171 264 IPR012677 -
Vian1g00363 731 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 256 IPR000504 GO:0003723
Vian1g00363 731 SUPERFAMILY RNA-binding domain, RBD 31 164 IPR035979 GO:0003676
Vian1g00363 731 SMART rrm1_1 177 252 IPR000504 GO:0003723
Vian1g00363 731 SMART rrm1_1 86 162 IPR000504 GO:0003723
Vian1g00363 731 MobiDBLite consensus disorder prediction 1 82 - -
Vian1g00363 731 ProSitePatterns WW/rsp5/WWP domain signature. 592 617 IPR001202 GO:0005515
Vian1g00363 731 SUPERFAMILY RNA-binding domain, RBD 176 278 IPR035979 GO:0003676
Vian1g00363 731 MobiDBLite consensus disorder prediction 356 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00363 Vian-Chr1 3242241 3257587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00363 84 261 Eukaryotic Initiation Factors Gene Family AT4G34110 27.320 8.41e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00363 - - gmx:100798390 1091.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00363 1 3242241 3257587 Vian1g00363 1 3242241 3257587 ECH