Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00362 ATGGAGGAGAAGAGAGAGAAAGAAGCGAACTCAAAGTCATCATCCACCATGGCAAATTCTGTGGCATTTTCCGACGAGATTCCCAACATGACCATGACCATGTCCTTCCCTTTCTCCCCTGCTTTCTCCACCATCTTCGACATCATGCCACCTCTTCCTCCACCGCCATCTTCATCCTTGCCTCACGATCCAAAAGCTTCAAACTTTCCCTTCATGGACTTGCTGTCTGTCCCTGATTATATCCCTTCCTTATTCGACTGGCCCCAAAACACCGCCGTCACCTCACCACCACCGCCACCAGCCCCCACCCAAATCACCCACGCGCTTCCCTCCCCGGCCAGCTCCAATGTCCCCGACGGAGGCTCCGAGGTCCTCAACACTCCTCCGTCTCCCAACTACTCCTCGATTTCCTCCTCCTCGAATGAGGCCGCCGCGGCCGCCGCCAACAAAGCAACTGGAAATGAAGACGAACCGGAGGAGGATGAAACGGCAACAGATGCAGCAGGAAAAGGAGAAGACCAAGATCAAGACAAGTCTAAGAATCAGCCGAAGCCGAAAAAGAAGCACCAAAAGAAGCCAAGAGAACCAAGATTTGCGTTCAAGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTATAGGTGGCGCAAGTACGGTCAGAAAGCCGTCAAAAACAGCCCTCATCCCAGGAGCTACTATCGTTGCACCACCGCGGCATGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCGGAGGACCCTGCGGTGGTGGTGACAACCTACGAGGGGCAACACACGCACCCTTGTCCTGCCACGTCACGGGCTAGCCTCGGGTTCTTGCACTCCGAACCAAGCGCGTTCGGACCCACCAGTGGACTCTTCATGCTGCAACAACAACAACACCAACAGTTTCGTCATGACCAAGCACAGGCACAAGCTCAAGCTCAAGCTCAAGCTCAAGTAGCAATGTTGTACAACTCCACAACCACCAGCACCTCGTCTTCATCATCACCTCTGAATGTTGTTAACTCAGCTACTTGTATAAACGACTATGCCAATACGTCGTCGTTGAGTGGGTTCCTTCAGAGCCAAGAGAATCTGCGAGCTTTTGCGCTATCTAGGGTGGGAGGTCCTCAGGGTTTCTTCAATGGGCTTCTTCAGGACATGCTGCCAACGCAGATGATGAATGAAGAGAGGGGAGATCGTGTCTAG 1209 0.5352 MEEKREKEANSKSSSTMANSVAFSDEIPNMTMTMSFPFSPAFSTIFDIMPPLPPPPSSSLPHDPKASNFPFMDLLSVPDYIPSLFDWPQNTAVTSPPPPPAPTQITHALPSPASSNVPDGGSEVLNTPPSPNYSSISSSSNEAAAAAANKATGNEDEPEEDETATDAAGKGEDQDQDKSKNQPKPKKKHQKKPREPRFAFKTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTAACGVKKRVERSSEDPAVVVTTYEGQHTHPCPATSRASLGFLHSEPSAFGPTSGLFMLQQQQHQQFRHDQAQAQAQAQAQAQVAMLYNSTTTSTSSSSSPLNVVNSATCINDYANTSSLSGFLQSQENLRAFALSRVGGPQGFFNGLLQDMLPTQMMNEERGDRV 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00362 402 FunFam WRKY transcription factor 57 195 269 - -
Vian1g00362 402 SUPERFAMILY WRKY DNA-binding domain 202 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g00362 402 SMART WRKY_cls 209 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g00362 402 MobiDBLite consensus disorder prediction 107 147 - -
Vian1g00362 402 ProSiteProfiles WRKY domain profile. 204 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian1g00362 402 Gene3D WRKY domain 195 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian1g00362 402 MobiDBLite consensus disorder prediction 91 205 - -
Vian1g00362 402 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 116 310 IPR044810 GO:0003700
Vian1g00362 402 MobiDBLite consensus disorder prediction 92 106 - -
Vian1g00362 402 MobiDBLite consensus disorder prediction 164 182 - -
Vian1g00362 402 Pfam WRKY DNA -binding domain 210 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00362 Vian-Chr1 3228017 3229837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00362 99 293 WRKY Transcription Factor Family AT2G47260 50.254 4.36e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian1g00362 WRKY 1.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00362 - - gmx:100808190 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00362 1 3228017 3229837 Vian1g00362 1 3228017 3229837 ECH
Vian6g01126 6 28796606 28798484 Vian1g00362 1 3228017 3229837 PCT