Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00360 ATGGCATCATCATCCTCATCGTCAATGATCACAAACCCGCCAACAGCGAGCACGGAGCGGTCACGTGACGCCAAGAGAAGAAAGAAGAAGAAAACACAGGAACGAGAGGACGAGAAGCAGCCCAGGTGGAAATCCCAAGCGCAGCAACAAATCTACTCCTCCAAGCTGCGCCAAGCCTTAGCCAGAGTCAACCTCGGCTCCGCGTCGCCAAAAGGCAAAGCCGTGCGCGAAGCTGCCGACAGAGTCCTGGCCGTGACGGCCAGGGGAAGGACGCGCTGGAGCCGAGCCATCCTCACCAACCGGCTCAAGCTCAAGTTCACGAAACACAAGAGACAGAGAGTGGCGGCGACGTCCCCTGGCCGGTCGAAGAGAGCTCGCGTGAGCGTTCACCGGCTGAAGGCGAAGGGTGGAGCGAGTGTGCAGAGGAAAGTTAGGTTCCTGGGACGGTTGGTTCCCGGTTGCCGGAAAGAACCGTTGCCGGTTGTTCTGGAAGAAGCCATCGATTACATACCCGCGCTTGAGATGCAGGTTCGAGCCATGAACGCTCTCTTTAACCTTCTCTCCGCCGCTTCTTCTTCTTCGTCTTCTTCTCCTTCCTCGTAA 603 0.5755 MASSSSSSMITNPPTASTERSRDAKRRKKKKTQEREDEKQPRWKSQAQQQIYSSKLRQALARVNLGSASPKGKAVREAADRVLAVTARGRTRWSRAILTNRLKLKFTKHKRQRVAATSPGRSKRARVSVHRLKAKGGASVQRKVRFLGRLVPGCRKEPLPVVLEEAIDYIPALEMQVRAMNALFNLLSAASSSSSSSPSS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00360 200 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 190 IPR036638 GO:0046983
Vian1g00360 200 MobiDBLite consensus disorder prediction 1 18 - -
Vian1g00360 200 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 45 190 IPR044660 GO:0006355
Vian1g00360 200 MobiDBLite consensus disorder prediction 1 49 - -
Vian1g00360 200 CDD bHLH_AtIBH1_like 131 183 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00360 Vian-Chr1 3198697 3199299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00360 38 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 54.857 1.75e-50 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00360 - - pvu:PHAVU_003G116200g 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00360 1 3198697 3199299 Vian6g01124 6 28741081 28741689 PCT