Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian1g00359 | ATGAACGGGAAAAGGATAGAAGGGAACGGAACAGGCTTTCGGTACTTAGTGATAGAATTAATACATGGGTTTGATGATGATGAAGATGGGGATGCATCATGTGTATTAAGGCGGCAACATCAGGCAGTGATCCACCCGGAAGACGCGCAGTTGCTTCGTCCAGTTGGGAATAAGTTGGGGGATGTCCTTGTCGTGAAGAAGCTTGACGGAAGAGAGAAAGGTAAACGGAAATGGAAGAGAGGAAGAGATTCGGTCCATATTAATGGGCTTGGCCCACAGCTCAGCCCAACAAGTGAGGGAATTGGCGCGCAAAGTGAGAGAGAAAGAAGCATGGAACCAGGAAACCCTTCGACGACGAGGCTTCCTGACTATCGGAGAATGGATGAGGCTGACCAGGCTGCGGAGATGGAACTGGACGCACTTCAAGGAACACTTAGGGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCCAGGAAATTCAAGGACTTCTTACTTACGTATGTTAATCCGAAAAATGAACACCGGGACAAGGAATATGTGTGGTTGATAAATGATATGGTTTCAGCTAGTAAGTGCAGTTTGGAGATTGATTATAAACAATTTATCTATGTTCATCCCAACATCGCCATTTGGCTGGCTGATGCGCCTCAGTCTGTCTTAGAAGTAATGGAAGATGTTACCAAGAGCGTTGTCTTTGATTTGCATCCAAATTATAGAAATATACACCAAAAGATTTACGTACGCATTACCAACTTGCCAGTATACGATCAGATTCGGAATATAAGACAAATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACTAGGCGCTCCGGAGTTTTTCCCCAGTTGCAGCAGGTGAAGTATGACTGTAACAAATGTGGGGCAATTTTGGGACCCTTTTTCCAGAATTCCTATTCAGAGGTGAAAGTTGGATCCTGTCCTGAGTGCCAATCAAAAGGACCCTTCACTGTCAACATTGAACAGACAATTTATAGGAACTTTCAGAAGCTTACCCTCCAAGAAAGTCCAGGAATAGTTCCTGCAGGTCGACTTCCAAGATACAAGGAAGTGATATTATTGAATGATCTTATTGACTGCGCTCGGCCTGGCGAAGAGATTGAGGTCACTGGGGTTTATACCAATAATTTTGACTTATCCCTAAACACAAAAAATGGGTTTCCAGTATTTGCCACTGTTGTTGAGGCAAATTATGTTACGAAAAAGCAAGACCTGTTTTCTGCTTACAAACTTACACAGGAAGACATAGCAGACATTGAAAATTTGGCCAAAGACCCTCGAATCGGAGAAAGGATTATGAAGTCCATTGCTCCATCAATCTATGGTCACGATGACATAAAAACCGCAATCGCTTTAGCTATGTTTGGAGGCCAAGAAAAAAATGTTGAAGGAAAGCATCGGCTTCGAGGAGACATAAATGTTCTTCTTCTGGGTGATCCAGGAACAGCGAAGTCTCAATTTCTCAAGTACGTTGAAAAAACTGGACAGAGAGCTGTATACACTACTGGCAAAGGGGCTTCAGCTGTGGGTCTCACGGCTGCTGTTCACAGGGATCCAATCACACGGGAGTGGACTCTTGAGGGAGGAGCCCTTGTTCTAGCCGACAGAGGAATTTGTCTTATTGACGAGTTTGACAAAATGAATGACCAAGATAGGGTGAGTATCCACGAAGCCATGGAGCAGCAGAGTATTAGTATATCAAAAGCTGGAATTGTTACATCTCTTCAGGCACGCTGTTCTGTAATTGCTGCAGCAAATCCTGTTGGAGGAAGATATGATTCCTCGAAAACATTCTCTCAGAATGTTGAATTGACAGATCCTATTATTTCTCGTTTTGATGTCCTCTGCGTTGTGAAGGATGTTGTTGATCCCGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCTAACCAAGATGATAAGTCCTTTAGTGAGTCCAAAGATGTCCATGCATCCACCGTGCCAGTTGATCCAGAGATACTTCCTCAAGAACTATTGAAGAAGTACATTACATATGCGAAGTTGAATATTTTTCCAAGGTTACAAGATGCCGATATGGATAAACTGTCTCATGTATATGCGGAATTGCGGAGGGAATCTTCTCACGGACAAGGAGTCCCTATCGCTGTAAGGCACATCGAATCCATGATACGGATGTCTGAAGCTCACGCGAGAATGCATCTCAGACAACATGTTACACAAGAGGATGTGGACATGGCAATTCGTGTTCTACTTGAATCATTCATTTCCACACAGAAGTTTGGGGTTCAGAAGGCTCTTCAAAAGAGCTTTAGAAAGTACATGACTTTCAAGAAGGACTATAATGAACTGCTGCTTTATATTCTCCGGGAGCTTGTAAAAAATGCTCTGCATTTCGAAGAAATTGTCACAGGGTCTACTTCAGGGCTAACTTATGTAGATGTTAAAGTAGATGATCTGTACAATAAGGCTCAAGAGCATGACATCTATGATCTCAAACCATTCTTCAATAGCAACCAGTTTTCAAGGGCCAATTTTGTGTTGGATGAAGAACGGAAAGTGATCAGGCATCGCCTTGTGGAACCCTTTCAAAGTCTTCAATCAATGAATTTTGCATCCTGA | 2664 | 0.4321 | MNGKRIEGNGTGFRYLVIELIHGFDDDEDGDASCVLRRQHQAVIHPEDAQLLRPVGNKLGDVLVVKKLDGREKGKRKWKRGRDSVHINGLGPQLSPTSEGIGAQSERERSMEPGNPSTTRLPDYRRMDEADQAAEMELDALQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHRDKEYVWLINDMVSASKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVTKSVVFDLHPNYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDIADIENLAKDPRIGERIMKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHRDPITREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSQNVELTDPIISRFDVLCVVKDVVDPVTDEMLATFVVDSHFKSQPKGANQDDKSFSESKDVHASTVPVDPEILPQELLKKYITYAKLNIFPRLQDADMDKLSHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLESFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYILRELVKNALHFEEIVTGSTSGLTYVDVKVDDLYNKAQEHDIYDLKPFFNSNQFSRANFVLDEERKVIRHRLVEPFQSLQSMNFAS | 887 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian1g00359 | 887 | Pfam | MCM AAA-lid domain | 685 | 769 | IPR041562 | - | |
| Vian1g00359 | 887 | Pfam | MCM P-loop domain | 427 | 649 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vian1g00359 | 887 | Gene3D | - | 287 | 337 | - | - | |
| Vian1g00359 | 887 | CDD | MCM2 | 442 | 768 | - | - | |
| Vian1g00359 | 887 | FunFam | DNA helicase | 152 | 256 | - | - | |
| Vian1g00359 | 887 | Gene3D | - | 152 | 256 | - | - | |
| Vian1g00359 | 887 | ProSiteProfiles | MCM family domain profile. | 439 | 645 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vian1g00359 | 887 | MobiDBLite | consensus disorder prediction | 652 | 671 | - | - | |
| Vian1g00359 | 887 | MobiDBLite | consensus disorder prediction | 90 | 117 | - | - | |
| Vian1g00359 | 887 | SUPERFAMILY | Nucleic acid-binding proteins | 161 | 408 | IPR012340 | - | |
| Vian1g00359 | 887 | FunFam | DNA helicase | 419 | 792 | - | - | |
| Vian1g00359 | 887 | Gene3D | - | 260 | 385 | IPR012340 | - | |
| Vian1g00359 | 887 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 449 | 772 | IPR027417 | - | |
| Vian1g00359 | 887 | Gene3D | - | 419 | 792 | IPR027417 | - | |
| Vian1g00359 | 887 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 145 | 820 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Vian1g00359 | 887 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 327 | 341 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Vian1g00359 | 887 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 269 | 286 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Vian1g00359 | 887 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 292 | 304 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Vian1g00359 | 887 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 403 | 414 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Vian1g00359 | 887 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 388 | 399 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Vian1g00359 | 887 | MobiDBLite | consensus disorder prediction | 74 | 124 | - | - | |
| Vian1g00359 | 887 | ProSitePatterns | MCM family signature. | 548 | 556 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Vian1g00359 | 887 | Pfam | MCM N-terminal domain | 160 | 253 | IPR027925 | - | |
| Vian1g00359 | 887 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 480 | 495 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vian1g00359 | 887 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 568 | 581 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vian1g00359 | 887 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 619 | 627 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vian1g00359 | 887 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 540 | 554 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vian1g00359 | 887 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 592 | 604 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vian1g00359 | 887 | FunFam | DNA helicase | 287 | 337 | - | - | |
| Vian1g00359 | 887 | Pfam | MCM OB domain | 259 | 386 | IPR033762 | - | |
| Vian1g00359 | 887 | SMART | mcm | 256 | 770 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian1g00359 | Vian-Chr1 | 3186706 | 3198620 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian1g00359 | 141 | 870 | Core DNA Replication Machinery Family | AT1G44900 | 81.943 | 0.0 | 1243 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian1g00359 | K02540 | - | gmx:100799441 | 1425.99 |