Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00356 ATGATCCTGGCATTGATGAATCTGTTCTCGCTGTGTTGGAAGCCGTTCGGGCGCGATGCTGATCGATACGATTCCATCGGAGTTATCGGGAGCAACTTCGCCGGGAGAGAAGGCAGAGAAGGTTTGCTCTGGTTCCGCGACGTCGGAAAATATGCCTCCGGCGATTTCTCCATGGCCGTAGTTCAGGCCAACCAGGTTCTTGAAGACCAGAGCCAGATCGAGTCCGGTCCTCTCGGCACATTCGTCGGCATATACGATGGTCACGGAGGACCCGACGCCTCCAGATATGTTTGCGATCACTTGTTTCGCCATTTTCAAGCAACGTCGGCTGAGTCACGCGGGCTTGTTACAGCGGAAACAATTGAAAGAGCATTTCGCCAGACGGAAGATGGATACACAGCCCTCGTGTCAGGTTCCTGGAATGCTCGACCTCAAATTGCGAGTGCTGGTACCTGTTGTCTAGTTGGAGTGATATTTCAACAGACACTCTTTGTGGCAAACGTTGGAGATTCCCGTGTTGTATTGGGTAAGAAAGTTGGCAACACTGGAGGTATGGCTGCAATTCAGCTGTCTACAGAACACAATGCAAATCTTGAGGCTGTTAGACAGGAACTTAAAGAATTACACCCTCATGATCCTCAAATTGTGGTCCTCAAACATGGAGTGTGGAGAGTAAAAGGCATTATTCAGGTTTCTAGATCTATAGGTGACGTATATTTGAAACATCAACAATTTAACCGGGAACCACTTAATGCAAAATTCAGACTTCCTGAACCGATGCACATGCCTATCCTGAGTGCTAATCCCACTATTCTTTCTCATCCTCTGCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGGTTATGGGAGCACTTGAGTAATGAGAAAGCTGTGGATATTGTAAACAGCAATCCACATGCGGGTAGTGCGAAGAGACTTATCAAGGCTGCCCTCCACGAAGCAGCAAGAAAACGAGAAATGCGGTATTCGGATCTGCGTAAGATTGACAAGAAGGTTCGACGCCATTTCCATGATGATATATCTGTTATTGTTTTATTCTTAAATCACGACCTTATTTCCAGAGGCACAGTGCTAGACTCGGCACTTTCACTTCGAAGCGCTCTCGATCACTGA 1140 0.4702 MILALMNLFSLCWKPFGRDADRYDSIGVIGSNFAGREGREGLLWFRDVGKYASGDFSMAVVQANQVLEDQSQIESGPLGTFVGIYDGHGGPDASRYVCDHLFRHFQATSAESRGLVTAETIERAFRQTEDGYTALVSGSWNARPQIASAGTCCLVGVIFQQTLFVANVGDSRVVLGKKVGNTGGMAAIQLSTEHNANLEAVRQELKELHPHDPQIVVLKHGVWRVKGIIQVSRSIGDVYLKHQQFNREPLNAKFRLPEPMHMPILSANPTILSHPLQPNDSFLIFASDGLWEHLSNEKAVDIVNSNPHAGSAKRLIKAALHEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFLNHDLISRGTVLDSALSLRSALDH 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00356 379 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Vian1g00356 379 ProSiteProfiles PPM-type phosphatase domain profile. 55 356 IPR001932 -
Vian1g00356 379 SUPERFAMILY PP2C-like 65 357 IPR036457 -
Vian1g00356 379 PANTHER PROTEIN PHOSPHATASE 53 354 IPR015655 GO:0004722|GO:0006470
Vian1g00356 379 Pfam Protein phosphatase 2C 79 326 IPR001932 -
Vian1g00356 379 SMART PP2C_4 42 354 IPR001932 -
Vian1g00356 379 FunFam Probable protein phosphatase 2C 42 46 364 - -
Vian1g00356 379 Gene3D - 47 364 IPR036457 -
Vian1g00356 379 CDD PP2Cc 56 356 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00356 Vian-Chr1 3160224 3163574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00356 1 376 PP2C-type Phosphatase Gene Family AT4G38520 57.662 3.23e-157 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00356 K01102 - gmx:100790813 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00356 1 3160224 3163574 Vian1g00356 1 3160224 3163574 ECH
Vian1g00356 1 3160224 3163574 Vian6g01121 6 28714960 28722207 PCT