Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00316 ATGCTCCTCCCAATCCACTGTTGCTACCTCAGCACCATCGTCGCGCTGACAATCTTCCTGTCCGTCAGGTCGTTTTCCGACGCTCAATCCTGCAATGGCATCCTCGTTTCTTATGCCTATACCGGCGGCTCGCGGCTGCCGCCGAATGTCTCCAACGCGGCGGAGCAGCCCTACCGGTTCGAGTCGACGTTGACAGTACTCAACAACGGCCTCGATGAACTCAAGTCGTGGAAGGTCTTCGTGGGGTTTGACCATGACGAGTTGTTGGTCTCTGCGTCCAATGCGGTTCTCGCCGACGGCACAACCCTCCCGGCCGCCGTCGGAAACGGCACTGTTTTCGCTGGCTACCCCATGACCGATCTTAAGACCGCCGTCGCCACCGCCGGAGACTTGACCCAGATGCAGGTTCAGATCAACCTCGTCGGCACCGTGTTCGGGGTGGCGCCGCCCAGTGTTCCGATGCCGAAATCCATCAATCTCGCCAATGATGGATTCGTATGTCGTGCATCCACCACCCAAGGGAAGAATGCTAGTAGTGTGTGCTGCACTAGAGATCCCAAGTTCAAAACTAACATCACCACGGATGAAGAGTTTCTGCCACGTCAGAATGGTGATCTTAGTATTATGTATGACGTGATAAGAACTTACGATTCTAATTACTGGGCTGAGGTTACTATTGCAAATCATAACCCACTTGGGAGGCTTGACAACTGGAGGTTGAGCTGGGACTGGATGAATGATGAGTTTATATATTCAATGAAAGGGGCTTATCCTTCTGTTGTTGATGCTTCTGAATGTTTGTTCGGTAAGCAAGGTACATTCTATAAGGATCTTGACTTTGCCACTGTTTTGAATTGTGAGAGAAGGCCAACCATAATTGATCTCCCCCCTACCAAGTTCAATGATTCTGACCTTGGGAAGATTCCCTTTTGCTGCCGGAATGGTACTATTTTGCCGCCCTCCATGGATCCTAGCATGTCAGCCTCAAGATTCCAAATGCAGGTTTTCAAGATGCCACCGGCGCTTAACCGATCCCAACTTTCACCTCCGCAGAACTGGAAGATAAGCGGTACACTCAACCCTGACTATAAATGCGGCCCTCCTGTAAGAGTGAGTCCCACCGAAAACCCCGATCCTTCTGGCTTACCGTCGAACAAAACTGTGATGGCCAGTTGGCAGGTTGTGTGCAACATTACGACAGCCAAGGGAACATCAAGTAAATGCTGTGTTTCATTTTCGGCCTATTACAATGATTCAGTTATTCCATGCAAAACATGTGCTTGTGGATGTCCCCAGAATAGAGAGAGAACATGTAGTACTACTGCCTCAGCTATGTTGCTTCCACCAGAGGCACTTCTTGTTCCTTATGAAAACCGAACCGCCAAGGCAATTGCTTGGGCAAGCCTGAAACATTTTCCAGTGCCAAACCCGATGCCCTGTAGTGATAACTGTGGTGTGAGCATCAACTGGCATTTGCTCACGGACTACAATAAAGGATGGAGTGCAAGGGTGACACTTTTTAACTGGGGTGAGACCAATTTTGCAGACTGGTTTGCTGCAGTACAAATGGACAAAGCAGCTGCAGGTTTTGAGAAAATGTACTCTTTCAATGCAACCCTTGTAGATGGTGTAAACAACACAATTATTATGCAAGGTTTGCCAGGATTGAACTACCTTGTAGCAGAAGCTGACGGAGCTGACCCTCTGAGAGATCCTAGGGTGCCTGGTAAACAACAATCAGTGATCTCTTTCACAAAGAAACTTACTCCTGGAATCAATACGGTTCGTGGAGATGGTTTTCCCACTAAAGTTCTTTTCAATGGAGAGGAATGCTCTCTTCCTTCCGTGCTTCCAACTAGTGGTGGTTCTTGGGATGGTTTTTCATTGGGAACTTCAGTGCTACTGTCACTGTTGTCGTTCCTCTTGATGAGATGA 1935 0.4873 MLLPIHCCYLSTIVALTIFLSVRSFSDAQSCNGILVSYAYTGGSRLPPNVSNAAEQPYRFESTLTVLNNGLDELKSWKVFVGFDHDELLVSASNAVLADGTTLPAAVGNGTVFAGYPMTDLKTAVATAGDLTQMQVQINLVGTVFGVAPPSVPMPKSINLANDGFVCRASTTQGKNASSVCCTRDPKFKTNITTDEEFLPRQNGDLSIMYDVIRTYDSNYWAEVTIANHNPLGRLDNWRLSWDWMNDEFIYSMKGAYPSVVDASECLFGKQGTFYKDLDFATVLNCERRPTIIDLPPTKFNDSDLGKIPFCCRNGTILPPSMDPSMSASRFQMQVFKMPPALNRSQLSPPQNWKISGTLNPDYKCGPPVRVSPTENPDPSGLPSNKTVMASWQVVCNITTAKGTSSKCCVSFSAYYNDSVIPCKTCACGCPQNRERTCSTTASAMLLPPEALLVPYENRTAKAIAWASLKHFPVPNPMPCSDNCGVSINWHLLTDYNKGWSARVTLFNWGETNFADWFAAVQMDKAAAGFEKMYSFNATLVDGVNNTIIMQGLPGLNYLVAEADGADPLRDPRVPGKQQSVISFTKKLTPGINTVRGDGFPTKVLFNGEECSLPSVLPTSGGSWDGFSLGTSVLLSLLSFLLMR 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00316 644 Pfam COBRA-like protein 220 399 IPR006918 GO:0010215|GO:0016020
Vian1g00316 644 PANTHER COBRA-LIKE PROTEIN 7 26 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00316 Vian-Chr1 2806973 2809101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00316 31 618 COBRA Gene Family AT4G16120 69.543 0.0 885
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00316 - - gmx:100803929 1199.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00316 1 2806973 2809101 Vian1g00316 1 2806973 2809101 ECH
Vian1g00316 1 2806973 2809101 Vian4g00088 4 819822 822018 PCT