Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00315 ATGTCAACGGTTACTACAACAGGGGTTATGAAATCCGGAGATGTTGTCTCCAACCAGTTTCCGGCGGGTCTCAGGGTTCTGGTGGTCGACGATGATCCCACGTGCCTCATGATTCTCGAGAAGATGCTTCGCACATGCCTCTACGAAGTTACCAAATGCAACCGAGCAGAGACTGCGCTTTCACTTCTTAGAGAGAACAAAAATGGGTTTGACATTGTTATAAGCGATGTGCATATGCCTGACATGGATGGATTTAAACTTCTGGAGCACATTGGGTTGGAGATGGACCTTCCTGTTATCATGATGTCTGCGGATGATGGTAAAAGTGTTGTTATGAAGGGTGTGACTCACGGTGCTTGTGATTATCTGATTAAGCCTGTTCGCATTGAGGCTTTGAAGAACATATGGCAGCATGTGGTTCGGAAGAAGAAGAATGAGTGGAAAGACGCAGAGCAATCCGGCAGTGCCGAAGAAGGAGATCGCCAACCTAAGGCATCTGATGAAGCAGATTACTCTTCCTCGGCTAACGAAGGCAGTTGGAGAAACTCAAAAAAGAGAAGGGACGAGGAGGAGGAGGAGGCAGAGGATAGAGATGACACATCCACGTTAAAGAAACCTCGAGTTGTTTGGTCTGTGGAGCTTCATCAACAGTTTGTGGCTGCTGTGGATCAGCTGGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGAAATACCGGTTGTATCTTCGAAGATTGAGTGGAGTTTCTCAACACCAGAATAATATGAACAACTCCTTTCTCGGCTCTCAAGAGGCAACGTTTGGAACAATTTCTTCAATTAGCGGGATTGATCTTCAAACTCTTGCAGTTGCTGGCCAGCTTCCTGCTCAAAGTCTGGCTACTCTTCAAGCAGCAGGACTTGGTAGGTCAACTGCCAAAGCTGGTGTACCAATGCCTATCATGGATCAAAGAAACCTTTTTAGTTTTGAAAACCCAAGGGTAAGATTTGGAGAAGGCCAACAGCAACATTTAAGCAGCAGTAAACCAATGAACTTATTGCTTGGAATCCCTACCAACATGGAGCCTAAGCAGCTTGCCAATTTGCACCAGTCTACCCAATCCATTGCCAGCTTGAATATGCGAGTCAATGCATCTGCCCCACAAGGCAACCCCTTATTGATGCAGATGCCACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAAATACTGGTCCTCGTGTTCCTAGGCTTCCATCATCTTTGGGGCAGCCTAATGTATCAAATGGAATTTCTAATGGCTTTCTGGGAAGAAATGGCATTGCTGGTAATAACAGAGGACCTGCGTATAATCCTGTTCCACCAAACTCTTCGTTGTTGAGTTTTCCAATGAATCAAAGCTCTGAAATGTCCGTCAACAATAGTTTACCTCTTGGAAGCACTCCAGGTATGTCCAGTATCACAACAAAAGGCTCATTTCAGGAGGAAGTTACATCTGGAATTAAAACATCTGGTGGATTCCCAAGTTATGATATTTTTAATGAACTGCACCATCACAAGTCCCATGATTGGGAGATAACAAACCCAGGCCTGACATACAGTGCCCCCCATCATGCAAATCCTTTACAAGGTAACATTGATGTATCCCCATCAGTTTTAGTGCATCAAGGGTTTTCTTCTACCCAGCAGACCGGCCAGAGCAGAGATGCTACTTTAATTGGAAAATCTATGTTCTCCGTGGGACAAGGCTCGGAACAAGATAACCTCCAAAATGCTGTTCAACACCTCCATCCGCTTCTTGTTGACAATTCAGTAAGGGTTAAGTCTGAAAGAATTCCCGATGCAAGTTCCCAGACTAATCTCTTCCCTGACCATTATGGGCAGGAGGATCTGATGAGTGCGCTTCTAAAGCAGCAAGAAGGCATGGGACCAGCTGAGAGTGAGTTTGAATTTGATGCTTATTCTCTGGACAACATCCCTGTCTAG 2016 0.4524 MSTVTTTGVMKSGDVVSNQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDAEQSGSAEEGDRQPKASDEADYSSSANEGSWRNSKKRRDEEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNMNNSFLGSQEATFGTISSISGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKAGVPMPIMDQRNLFSFENPRVRFGEGQQQHLSSSKPMNLLLGIPTNMEPKQLANLHQSTQSIASLNMRVNASAPQGNPLLMQMPQSQPRGQMLSENTGPRVPRLPSSLGQPNVSNGISNGFLGRNGIAGNNRGPAYNPVPPNSSLLSFPMNQSSEMSVNNSLPLGSTPGMSSITTKGSFQEEVTSGIKTSGGFPSYDIFNELHHHKSHDWEITNPGLTYSAPHHANPLQGNIDVSPSVLVHQGFSSTQQTGQSRDATLIGKSMFSVGQGSEQDNLQNAVQHLHPLLVDNSVRVKSERIPDASSQTNLFPDHYGQEDLMSALLKQQEGMGPAESEFEFDAYSLDNIPV 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00315 671 Gene3D - 202 264 - -
Vian1g00315 671 MobiDBLite consensus disorder prediction 146 167 - -
Vian1g00315 671 SMART REC_2 24 136 IPR001789 GO:0000160
Vian1g00315 671 MobiDBLite consensus disorder prediction 146 202 - -
Vian1g00315 671 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 261 IPR017930 -
Vian1g00315 671 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Vian1g00315 671 CDD REC_typeB_ARR-like 26 140 - -
Vian1g00315 671 Gene3D - 24 159 - -
Vian1g00315 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 316 IPR045279 GO:0009736
Vian1g00315 671 SUPERFAMILY Homeodomain-like 202 262 IPR009057 -
Vian1g00315 671 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 258 IPR006447 GO:0003677
Vian1g00315 671 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Vian1g00315 671 Pfam Myb-like DNA-binding domain 207 257 IPR001005 -
Vian1g00315 671 SUPERFAMILY CheY-like 23 146 IPR011006 -
Vian1g00315 671 PIRSF RR_ARR_type-B 6 663 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vian1g00315 671 FunFam Two-component response regulator 24 161 - -
Vian1g00315 671 FunFam Two-component response regulator 201 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00315 Vian-Chr1 2800725 2803948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00315 59 671 Response Regulator Gene Family AT3G16857 51.767 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vian1g00315 Response_reg 6e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00315 - K14491 gmx:100814930 1219.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00315 1 2800725 2803948 Vian1g00315 1 2800725 2803948 ECH
Vian1g00315 1 2800725 2803948 Vian4g00089 4 822860 826165 PCT