Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00305 ATGGGGAGAATGGGACAAGACTCAGACCCCAAGTCCAAGTTGGTATTAGAGATTTGCTCCATTTCCACGCGTTCTGTTGTATGTGTTCATCATAAACTTCTCTCAGAATCAGCCAACACAACTTTCGTTGACTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGGTGAGTGCCATCCGTAAGAGGTACCATAAACTGGCCTTACACGTTCACCCGGATAAGAATAAGCACCCCAAGGCTGAAATTGCTTTCAAGCTCGTTTCTGAGGCGTATGCATGTTTATCTAATGCAGCAAAGAGAAAAGCCTTTGACTTGGAGAGATATAAGCATTTCTGCATCGAGTGCAAAAGAATTCCGTATACATCCAGTAATGTCCCTGTCAATTCAGGGGGACGAGGTTTTAAGGCATGGAATATCATCACAAGATCAAGATCTTTTAAACTTTGGAGAAATATTAGGGAAATGAGAGAAAGATTCATGGACGAGGCTAATGTGATAGAGAACTGTTTGCGAACAAATTCAATGTCAAGGAAAGAATCTCCAGGCCAGAATCCGGTTGGCTTTCTACACAGAAGCAAGTCGCTTCATAGATTTGAGAAAGAAACCCCTGTTTTCAATCCGTCGGATTATTTGTACCAAGGCTACCCTCACCTGAGGAGCAATATTTACAAGAATTCTTCAACTTTTTGGTACTTGCAGAGAAATAGTATGCTTCACAGTGAAAAGGGAGGAGCGCTGCATGCCTCCCCTGTTTTTGAGGTCCAATCTAGGAGTTTGTTTGCAAGCAAATTCGCTTTTGTCCCATCAAAATGCTAG 819 0.4249 MGRMGQDSDPKSKLVLEICSISTRSVVCVHHKLLSESANTTFVDWYCILGVEENAGVSAIRKRYHKLALHVHPDKNKHPKAEIAFKLVSEAYACLSNAAKRKAFDLERYKHFCIECKRIPYTSSNVPVNSGGRGFKAWNIITRSRSFKLWRNIREMRERFMDEANVIENCLRTNSMSRKESPGQNPVGFLHRSKSLHRFEKETPVFNPSDYLYQGYPHLRSNIYKNSSTFWYLQRNSMLHSEKGGALHASPVFEVQSRSLFASKFAFVPSKC 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00305 272 PRINTS DnaJ domain signature 64 79 IPR001623 -
Vian1g00305 272 PRINTS DnaJ domain signature 80 100 IPR001623 -
Vian1g00305 272 PRINTS DnaJ domain signature 46 64 IPR001623 -
Vian1g00305 272 PANTHER BNAC03G44070D PROTEIN 24 232 - -
Vian1g00305 272 ProSiteProfiles dnaJ domain profile. 44 108 IPR001623 -
Vian1g00305 272 FunFam Chaperone protein dnaJ 49 isoform A 43 166 - -
Vian1g00305 272 ProSitePatterns Nt-dnaJ domain signature. 85 104 IPR018253 -
Vian1g00305 272 Pfam DnaJ domain 44 105 IPR001623 -
Vian1g00305 272 SMART dnaj_3 43 100 IPR001623 -
Vian1g00305 272 Gene3D DnaJ domain 30 118 IPR036869 -
Vian1g00305 272 SUPERFAMILY Chaperone J-domain 40 108 IPR036869 -
Vian1g00305 272 CDD DnaJ 44 97 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00305 Vian-Chr1 2689684 2690882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00305 4 105 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.945 5.54e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00305 - - gmx:100801809 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00305 1 2689684 2690882 Vian1g00305 1 2689684 2690882 ECH
Vian1g00305 1 2689684 2690882 Vian4g00101 4 905209 906211 PCT