Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00300 ATGGTGGAAGAAAAACCCGATTTAAACTTTTATGTCCACTTGCCTATCAAAATGTGCGGTGGTTCTATCATCTCTGATTTCATACAAGTCGATATCAAGAATGTTCCAGAATCCACCACCCATCGCCTCTTCTATCAGCTCCACACTTTCAACGCCACCTCTTCTTCCACACTCAACAAAGTGGAGGAGCCATGTGAGAAGCTCAAGAACAGCAGAGTAGTTGCTCAGAAGGCTGGTGCGCGAGTACGGAAGAATGCCTACAGAGGAATCAGGCGAAGGCCGTGGGGCAAGTGGGCTGCCGAAATAAGGGACCCACGCAAGGGCGTTCGCGTGTGGCTCGGCACCTTCGCCACCGCGGAAGAAGCCGCACGCGCCTACGACGCCGCCGCCGTACGCATCCGCGGACACAAGGCCAAGCTCAACTTCCCCGACCATCACCGCCACCCATCCAACATCAACAACAACAACCCATGCCTCAGCCCCGAGTTGACTCAGTCGTGTTATCAACCTAGTCTTAATAACCTCGACCACGACCCTCAACTCGCGCAACAGATTTCCAACCTGGAATCGTTTCTTGGTTTGGAGCACGAACAGCTTCCGATGCAGCCGCTGCCACTTCCTGAGTGGGACCCGCTCCACGACGTCGTTTTGTCCAACCACCACCTCTTCTGA 672 0.5417 MVEEKPDLNFYVHLPIKMCGGSIISDFIQVDIKNVPESTTHRLFYQLHTFNATSSSTLNKVEEPCEKLKNSRVVAQKAGARVRKNAYRGIRRRPWGKWAAEIRDPRKGVRVWLGTFATAEEAARAYDAAAVRIRGHKAKLNFPDHHRHPSNINNNNPCLSPELTQSCYQPSLNNLDHDPQLAQQISNLESFLGLEHEQLPMQPLPLPEWDPLHDVVLSNHHLF 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00300 223 Gene3D AP2/ERF domain 86 144 IPR036955 GO:0003700|GO:0006355
Vian1g00300 223 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Vian1g00300 223 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Vian1g00300 223 SMART rav1_2 86 149 IPR001471 GO:0003700|GO:0006355
Vian1g00300 223 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
Vian1g00300 223 PANTHER DNA-BINDING DOMAIN 67 165 IPR044808 GO:0003700|GO:0009873
Vian1g00300 223 SUPERFAMILY DNA-binding domain 86 144 IPR016177 GO:0003677
Vian1g00300 223 FunFam Ethylene-responsive transcription factor 2 85 144 - -
Vian1g00300 223 Pfam AP2 domain 87 136 IPR001471 GO:0003700|GO:0006355
Vian1g00300 223 CDD AP2 87 145 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00300 Vian-Chr1 2642109 2642928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00300 18 195 AP2-EREBP Transcription Factor Family AT3G16770 43.379 1.95e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian1g00300 AP2 5.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00300 K09286 - vra:106752604 154.451