Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00299 ATGAATTCCAACTACGGCCAATCCAACACGAACAAATCGCCTTCCGTTTCCCTCAACAATTTCAATTTCGATTTCGATCTTGGCATCGGATCCAACCGTCCCAGGTCCCTCAACGACCAGAAAAACCCCAAAGCTTCCTATTCCACCACCACTACCACCACCTCTTCCTATTCCTATCCATATTCCTCCACCCAACCCAACAAGCAACCCTCATGGACACACCAACCCGCTCCCACTCAGACCACCGCCCTGCCCGGTGGCCCCCCCTCCATGGTCGGAGACATCTTCGGTAAAAGCTGGGGCACCACTCAACCTTCTGCCGCTTCCAAAAACATTGGGGTCGTTGATAAGAACCCTAATCTCTTCGGAGATTTGGTTAGTTCTGCTTTGGGTTCCAAGTCTACTGCTACCAATGTTCCTCTCAAAAACGCTACCCCAACCCCCAATAAAACCTCCTTTTCCATGGGAAACATGGCCAATTCTTTGCCCAAAACTGGTACCACGCCACAGAACAGTGCTAGTTGGGCATCGTCTTCTGGGGGGTTTAGCGTGAATGCCAACAAAACCCCCAATCTTGGGGGTGCTTCAATGCGAAACATGAGTAGTGGAATTGGAACCAGTTCTAATAACAAGGATCCTTTTAGTTCTTTGTCTGGTTTTGGATCCAAGCAGTCTGCTACTCTGAATTCAGCTGCCAAAGGGCCGAAGGTTGCCTCCGGGGATGATGGTTTTGGAGATTTCCAAAATGCTTCCAAATCTAGTTCGGATGGTTTTGGAGACTTTCAAAATGCTTCAAAACCAAGCTCACCCGCGTTTCCATCTGCTGCTTCTCCTGGGATTGATTTCAATTTTGCTGGATCTGCCGCTTCCACTCAGAGTCCTGTTCAGGGATCAGGTGGTAGTGCAATGAACATGTTTTTCACGGCGGCTTCCTCGCCCGCGGTTGGAGGTGCTGCTTCGGCCTCTGATGGATTTGGTGGACAGGACGATTGGGGTTTGGATTCGGAGTTTGGTGGGGGAGGCCATGATGTGGGTGGCACCACTACTGAGCTTGAGGGGCTGCCTCCTCCTCCTGCTGGGGTCTCTGGTTCCACTGCAAAAGGCAAGGGGATGGACAACTACAAGCAGGGACAATTTGCTGATGCTATTAAGTGGTTTTCGTGGGCCATTGTTCTTCTAGAGAAAGCTGGGGATGCTACCGCCACAGCTGAGGTTTTGTCATGCAGGTCTTCATGTTACAAAGAAGTCGGGGAGTATAAAAAGGCAGTGGCAGATTGTACCAAGATTCTTCAAAATGATGAAAGCAACGTAGCTGTCCTGGTACAGCGTGCTCTCTTGTACGAGAGTATGGAAAAGTACAAACTTGGAGCTGAAGACCTTAGGACTGTGCTGAAGATTGATCCTAGTAATAGGATTGCTAGAAGCACCGTTCACCGGTTGGCTCAGATGGCTGGTTAG 1458 0.4986 MNSNYGQSNTNKSPSVSLNNFNFDFDLGIGSNRPRSLNDQKNPKASYSTTTTTTSSYSYPYSSTQPNKQPSWTHQPAPTQTTALPGGPPSMVGDIFGKSWGTTQPSAASKNIGVVDKNPNLFGDLVSSALGSKSTATNVPLKNATPTPNKTSFSMGNMANSLPKTGTTPQNSASWASSSGGFSVNANKTPNLGGASMRNMSSGIGTSSNNKDPFSSLSGFGSKQSATLNSAAKGPKVASGDDGFGDFQNASKSSSDGFGDFQNASKPSSPAFPSAASPGIDFNFAGSAASTQSPVQGSGGSAMNMFFTAASSPAVGGAASASDGFGGQDDWGLDSEFGGGGHDVGGTTTELEGLPPPPAGVSGSTAKGKGMDNYKQGQFADAIKWFSWAIVLLEKAGDATATAEVLSCRSSCYKEVGEYKKAVADCTKILQNDESNVAVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRIARSTVHRLAQMAG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00299 485 Gene3D Tetratricopeptide repeat domain 363 484 IPR011990 GO:0005515
Vian1g00299 485 MobiDBLite consensus disorder prediction 246 272 - -
Vian1g00299 485 MobiDBLite consensus disorder prediction 1 26 - -
Vian1g00299 485 PANTHER OS03G0340700 PROTEIN 1 484 - -
Vian1g00299 485 MobiDBLite consensus disorder prediction 33 86 - -
Vian1g00299 485 SMART tpr_5 403 436 IPR019734 GO:0005515
Vian1g00299 485 SMART tpr_5 363 396 IPR019734 GO:0005515
Vian1g00299 485 SMART tpr_5 437 470 IPR019734 GO:0005515
Vian1g00299 485 MobiDBLite consensus disorder prediction 164 210 - -
Vian1g00299 485 MobiDBLite consensus disorder prediction 231 274 - -
Vian1g00299 485 MobiDBLite consensus disorder prediction 1 103 - -
Vian1g00299 485 SUPERFAMILY TPR-like 367 477 IPR011990 GO:0005515
Vian1g00299 485 ProSiteProfiles TPR repeat profile. 437 470 IPR019734 GO:0005515
Vian1g00299 485 MobiDBLite consensus disorder prediction 318 366 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00299 362 482 Calmodulin-binding Proteins AT3G25230 27.692 6.78e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00299 - - pvu:PHAVU_003G107800g 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00299 1 2635526 2639398 Vian1g00299 1 2635526 2639398 ECH