Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00295 ATGCATGAATCGTCTGAAGCAAAGTATTCTTTAGGCATGGAAAACCCTTCTTTTCCTTTAGGCATGAACAACCAGAATTTTCCTTCAGACATTGATGCGTTTAAGCAGCAGAAGAAAAAGGCAGGGCGGCAGAAGATCGAGATAAAGAAGATCGAGAAGTCTAGCAACAAGCAAGTGACATTCTCAAAAAGAAGAACAGGGCTATTCAAAAAAGCGAGTGAACTCTGCATTTTGTGCAATGTCAATATAGCCATTATTGTGTTTTCTCCTGCTGAAAAATTGTTCTGCTTCGGTCATCCAGACTTCGAGGGCATTGTTGAAAGCTACCTTAAAGGTTCCAAAGTGTTTGATCCACCGGAATCAAGGGAGAGATCAGTGTCGTATGAGGTGTGCAACAAGCAATACGAGGAGGCAATGAAGAAGTTGGAGTTGGAAAAGAAGAATCTCAGAGAAACTGAAACTCTGGTTAATAAGGGGTGTAACAGAAGGTGGTGGGAGGACCCTATTGATCAGATGAGTCAAAGTGAGTTGGAACAGTTTATGGTCTCTGTTTATGAGTTGAGGAGAAAATTAGCTGAAAGGGGTGGTGAATTGTTGATGCAATCAATGATATAA 615 0.4114 MHESSEAKYSLGMENPSFPLGMNNQNFPSDIDAFKQQKKKAGRQKIEIKKIEKSSNKQVTFSKRRTGLFKKASELCILCNVNIAIIVFSPAEKLFCFGHPDFEGIVESYLKGSKVFDPPESRERSVSYEVCNKQYEEAMKKLELEKKNLRETETLVNKGCNRRWWEDPIDQMSQSELEQFMVSVYELRRKLAERGGELLMQSMI 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00295 204 ProSiteProfiles MADS-box domain profile. 41 101 IPR002100 GO:0003677|GO:0046983
Vian1g00295 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 50 97 IPR002100 GO:0003677|GO:0046983
Vian1g00295 204 PRINTS MADS domain signature 63 78 IPR002100 GO:0003677|GO:0046983
Vian1g00295 204 PRINTS MADS domain signature 78 99 IPR002100 GO:0003677|GO:0046983
Vian1g00295 204 PRINTS MADS domain signature 43 63 IPR002100 GO:0003677|GO:0046983
Vian1g00295 204 Coils Coil 128 155 - -
Vian1g00295 204 CDD MADS_MEF2_like 42 114 IPR033896 GO:0000977|GO:0045944
Vian1g00295 204 PANTHER MADS BOX PROTEIN 43 191 - -
Vian1g00295 204 Gene3D - 54 119 IPR036879 GO:0003677|GO:0046983
Vian1g00295 204 SMART madsneu2 41 100 IPR002100 GO:0003677|GO:0046983
Vian1g00295 204 SUPERFAMILY SRF-like 42 113 IPR036879 GO:0003677|GO:0046983
Vian1g00295 204 FunFam Agamous-like MADS-box protein AGL62 53 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00295 Vian-Chr1 2625593 2626207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00295 38 189 Type I MADS-box Gene Family AT5G60440 40.741 3.66e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian1g00295 SRF-TF 9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00295 - - vra:106766532 340.502