Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00294 ATGAACGACAACATGGAAAACGATGAAGCTAAGGAAATCGAAGCGAATGATTTCGCGCTTAGCGGCAAGATAATGCTATTCGCCATCGTCGTTCTCTTCGTCATCATCATCATAATGCTCTGCCTCCACGTCTACGTCCGCTGCACCCTCCTTCGAGCTCGCCGCCGGCAACAACTTCCCCGAAGAAGCAACCGCCCGCAGTTCGTATTCTACATCGACCCCGCCGCCCGCATTGCCCTCACCTCGCGCGGCCTCCACCCCTCCGTCATCTCCACGCTCCCGGTCTTCACCTTCTCCGATTCCACCCAAAAATCGGAATGCGCGGTGTGCTTGTCAGAGTTTGAGAACGGAGAAACGGGTCGGGTCTTACCCAAATGCAACCATAGTTTCCATACTGAGTGCATCGACATGTGGTTCCAGTCCCACTCCACTTGTCCGCTTTGCAGGGCGCCTGTCGAGGCCATTTCGGAGCAAGAAACTCAATCTGAGGTGGCTGTTGTTGTGTGTGAACCTGAAACGGTTGGGGAAGAGGTGGACCGGTCTATACCGGTTGGTTCTTCTTCTTCTGCATTGCGTGACGAGAGCTTGGGGCGTGAGACGGAGTCTTCAATTATTTTTCCGGTTAGTCGGATAGTGTCGTTGAAGAGGATTCTCAGTAGAGAGAAAAAGGGAAGCATCTCGGGGTGTGTGGTGGGAGGTTGCAACTCCACGACCACCGAGTTAGATGCAGAACGCGAAGGGTGTGACTTGGGGAGTTGTTCATGA 765 0.5373 MNDNMENDEAKEIEANDFALSGKIMLFAIVVLFVIIIIMLCLHVYVRCTLLRARRRQQLPRRSNRPQFVFYIDPAARIALTSRGLHPSVISTLPVFTFSDSTQKSECAVCLSEFENGETGRVLPKCNHSFHTECIDMWFQSHSTCPLCRAPVEAISEQETQSEVAVVVCEPETVGEEVDRSIPVGSSSSALRDESLGRETESSIIFPVSRIVSLKRILSREKKGSISGCVVGGCNSTTTELDAEREGCDLGSCS 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00294 254 CDD RING-H2_EL5-like 106 149 - -
Vian1g00294 254 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 20 189 - -
Vian1g00294 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 155 IPR013083 -
Vian1g00294 254 SMART ring_2 107 148 IPR001841 -
Vian1g00294 254 SUPERFAMILY RING/U-box 95 155 - -
Vian1g00294 254 Pfam Ring finger domain 106 149 IPR001841 -
Vian1g00294 254 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Vian1g00294 254 FunFam E3 ubiquitin-protein ligase ATL6 74 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00294 Vian-Chr1 2613044 2613808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00294 1 247 Rapid Response to Elicitors AT3G16720 40.594 5.41e-53 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00294 - - gmx:100800859 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00294 1 2613044 2613808 Vian1g00294 1 2613044 2613808 ECH
Vian1g00294 1 2613044 2613808 Vian4g00114 4 1055202 1056038 PCT