Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00271 ATGCAGAACGAGGAGGGGAAACTCACTGAGTTATACGTTCCTAGAAAATGCTCTGCCACTAACAGACTCATAACTGCAAAGGACCATGCCTCGGTTCAGATGAACATTGGCCATTTGGATGAGAATGGTATCTACAATGGTCATTTTTCCACTTTTGCTCTCTGTGGTTTCGTTCGAGCACAGGGTGAGGCTGACAGTGCACTAGATAGGTTGTGGCAGAAGAAGAAGACAGAAGTTAAACAACACTAG 249 0.4498 MQNEEGKLTELYVPRKCSATNRLITAKDHASVQMNIGHLDENGIYNGHFSTFALCGFVRAQGEADSALDRLWQKKKTEVKQH 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00271 82 Pfam Ribosomal protein S21e 1 76 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vian1g00271 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 80 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vian1g00271 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Vian1g00271 82 FunFam 40S ribosomal protein S21 1 81 - -
Vian1g00271 82 Gene3D - 1 81 IPR038579 -
Vian1g00271 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00271 Vian-Chr1 2390466 2391511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00271 1 82 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 80.488 2.59e-50 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00271 K02971 - gmx:100817753 159.844