Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00268 ATGCTTAGTCCTGAAGGAGAACTTGAAATAAGTTTTGGCTATAAATGCAACAGTGATAGAGGTATTCCCTGTGAGGTTGCCAGTGGCTGCAAAATCCTTCCCGGAGTGCGTAGAACAAGTAGTTTCTCTTGCTTGTCAGGTGCAGCCTTAAGTGCGAATGCTACATTAGCCAACACAAACATCTGCAATGGTAAAATAGGTGAAGAAATCCTTCCAAGTTGGGACTCTCCTAATTCATTTCGTAAGGTAACCTCTTCGCCAAGTCTTTCAAAGTTGGACATACTATCATCTTCCCTCCCAAGTAGTTTGTCTTACCTTAGCTGCAGTCCTTCTACTACAAGTGACATCCTCGAATATGACTCTTGCACGTTAAAATCAATGAGCGATCCTTCCAGAAGTGAAGGTTTTCTTAATGTTAAGGAAGTTCAAGTAGCAGGAGGAGCTGCCGGTGAAGACAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGGTGGCTATTCTGTGCAATTTATGATGGCTTTAATGGAAGAGATGCAGCCGATTTTCTGGCTGGTACCCTGTATGACACCATCATATCATATTTTGATAAGTTAATCGAGGAATTGGAGCCAGGTTACATCAGAGCTTATAATGATGGGGGCTTGGATGAATCCCTGCAATGTAAGTTGAATGACAGCCTTATTTATCACGAAGATCAATCTATGGCAAGGTTTAAAGGAATAAATGATTCTAATCATGGATGTTATGCAAAGTGTAGCCTATCTACTAAGTCAGAACTATCATGTGATCCATTTTCACAAGGGGTACTTGATATCCTTGAACGTGCTATTAGTCAGGCAGAGAATGATTTCCTGTACATGGTGGAGCGGGAAATGGAGGAACGTCCTGATCTAGTTTCTATTGGATCTTGTGTTTTACTAGTGCTTCTTCATGGTAATGATTTGTATACACTTAATCTGGGTGACAGCAGAGCAGTTTTGGCAACCTGCATTACAGGTTGCCGAATGGATAAGAGTGAGAGACTGAAGGCTATACAGCTTACAGATAATCACACCGTTGATAATGAAGTTGAAAGAGCTAGACTTCTGGCCGAACATCCCGATGATCCCAGGATCGTTATAGCAGGAAAAGTGAAAGGGAAACTCAAGGTTACTCGCGCTTTTGGAGTTGGCTACTTGAAAAAGAAAAATTTGAATGATGCTTTGATGGGAATCCTTCGAGTTCGTGATCTTAAAAGCCCACCATACATATCCACTCAACCATCACTGAATGTCCATAGAATCTCAAGCTCCGATCAATTTGTGATAGTTGGAAGTGATGGTTTATTTGACTTCTTCAGCAACGATGAGGCAGTAAAGCTTGTAGAGTCTTATATCTTGAGCACCCCTTTTGGCGATCCAGCAAAGTTTCTGATAGAGCAGCTTGTGGCTAGAGCAGCTGTTTCTGCCGGTCATTTTTCGATATCTTTTGTTTGA 1473 0.4155 MLSPEGELEISFGYKCNSDRGIPCEVASGCKILPGVRRTSSFSCLSGAALSANATLANTNICNGKIGEEILPSWDSPNSFRKVTSSPSLSKLDILSSSLPSSLSYLSCSPSTTSDILEYDSCTLKSMSDPSRSEGFLNVKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTIISYFDKLIEELEPGYIRAYNDGGLDESLQCKLNDSLIYHEDQSMARFKGINDSNHGCYAKCSLSTKSELSCDPFSQGVLDILERAISQAENDFLYMVEREMEERPDLVSIGSCVLLVLLHGNDLYTLNLGDSRAVLATCITGCRMDKSERLKAIQLTDNHTVDNEVERARLLAEHPDDPRIVIAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRDLKSPPYISTQPSLNVHRISSSDQFVIVGSDGLFDFFSNDEAVKLVESYILSTPFGDPAKFLIEQLVARAAVSAGHFSISFV 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00268 490 Pfam Protein phosphatase 2C 283 466 IPR001932 -
Vian1g00268 490 SMART PP2C_4 127 482 IPR001932 -
Vian1g00268 490 CDD PP2Cc 149 479 IPR001932 -
Vian1g00268 490 PANTHER PROTEIN PHOSPHATASE 2C 142 475 IPR015655 GO:0004722|GO:0006470
Vian1g00268 490 ProSiteProfiles PPM-type phosphatase domain profile. 136 490 IPR001932 -
Vian1g00268 490 SUPERFAMILY PP2C-like 150 477 IPR036457 -
Vian1g00268 490 Gene3D - 105 485 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00268 Vian-Chr1 2370432 2372090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00268 4 483 PP2C-type Phosphatase Gene Family AT3G16560 61.728 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00268 - - vun:114178627 897.116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00268 1 2370432 2372090 Vian4g00141 4 1293704 1295606 PCT