Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00257 ATGAACACCATTCTCCGCCACCGCCTCAGGCTAAGTCCGACACCTATTCTCTATTGCTTCCCCAAATTCCTTTTTTCCCAACCCTTTCACTTTTTCTCAACAACCACTTCTGAGCCCTGCGCCTTCACCTTATCCTATCTCAGCAACACCTGCGGCTTCTCGCACGACGTCGCACTGAAACTATCTAAACGGCTTCGTTTCGAAACCGCAGAAAAACCCGATTCCGTCTTCTCTTTCTTCCGAACCCACGGTTTCTCCACCTCCCAGATCTGCCGCATCTTCTACCAAGCCCCAGAGCTCTTGGTATGCGACCCCACCAAAAGGCTTCTCCCCAAATTCCAATTCTTTGCCTCTAAAGGCGCTTCGCCCTCCGACACCATTCTCATCGTCTCCAAGACCGCCCGTGTCCTTCGTTACGGTCTCAACAGCCATATCATTCCCATCTTTGAACTGATCCGAACGTTCTTGCCCTCCGACCTAAAAGCCCTCGCTGTTTTCATCGCCTGTCCCAATTTCATCGGAGACGGTCGTGTTGCCTCCAACGTTCAGATGTTGCTCGACACCGGAGTGACGCACACCGGAATTCGCTACTTGCTCTGCTCTCGGCCTTCGGTTCTGTGCTCCGACCTGAGACCCGCTATTGAGGAAGTGAAGTTGTTGGGGTTTGACCCTTTGAAGCTGAGCTTCACTCTGGCCATTCTGGCTAAAAGGGCTGTTTCGAAACCTCTTTGGGATGCCAAAGTTGACGTCTTGAAGAAATGGGGTTGGTCCGAGGATGATATTTGTGTTGCTTTTAGGAACCAGCCTAATATTATGCTGCGTTCCAAGGAAAAACTTAATGCAGTGATGGGGTTTTGGGTTGGTAAGCTTGGTTGGGATCACTCCGTGCTTATTTCGTCCCCAACGTTGTTTTCGTACAGTTTGGAGAAAAGGGTTGCACCGAGGGCTTTGGTTGTGCAGTATCTTCTCTCCAAAGGATTGGTGAAGAAAAGTGCTAGCTTGGCCACACCTTTTGTTTTGTCTGATGAACGGTTTCTGCAAAAGTACGTGAAACGTTTCGAGGAGAAAACGCCCAGGTTACTAGAGTTATATCAGGCGGCACAGGGAACATGCTAG 1116 0.5 MNTILRHRLRLSPTPILYCFPKFLFSQPFHFFSTTTSEPCAFTLSYLSNTCGFSHDVALKLSKRLRFETAEKPDSVFSFFRTHGFSTSQICRIFYQAPELLVCDPTKRLLPKFQFFASKGASPSDTILIVSKTARVLRYGLNSHIIPIFELIRTFLPSDLKALAVFIACPNFIGDGRVASNVQMLLDTGVTHTGIRYLLCSRPSVLCSDLRPAIEEVKLLGFDPLKLSFTLAILAKRAVSKPLWDAKVDVLKKWGWSEDDICVAFRNQPNIMLRSKEKLNAVMGFWVGKLGWDHSVLISSPTLFSYSLEKRVAPRALVVQYLLSKGLVKKSASLATPFVLSDERFLQKYVKRFEEKTPRLLELYQAAQGTC 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00257 371 Gene3D Transcription termination factor 3, mitochondrial 174 356 IPR038538 -
Vian1g00257 371 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Vian1g00257 371 SMART mt_12 294 328 IPR003690 GO:0003690|GO:0006355
Vian1g00257 371 SMART mt_12 163 191 IPR003690 GO:0003690|GO:0006355
Vian1g00257 371 SMART mt_12 196 223 IPR003690 GO:0003690|GO:0006355
Vian1g00257 371 SMART mt_12 91 122 IPR003690 GO:0003690|GO:0006355
Vian1g00257 371 FunFam Mitochondrial transcription termination factor-like 141 357 - -
Vian1g00257 371 Pfam mTERF 246 346 IPR003690 GO:0003690|GO:0006355
Vian1g00257 371 Pfam mTERF 78 214 IPR003690 GO:0003690|GO:0006355
Vian1g00257 371 PANTHER CGI-12 PROTEIN-RELATED 42 352 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00257 Vian-Chr1 2271885 2273000 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian1g00257 mTERF 1.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00257 K15032 - gmx:102666622 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00257 1 2271885 2273000 Vian1g00257 1 2271885 2273000 ECH
Vian1g00257 1 2271885 2273000 Vian4g00152 4 1366361 1367542 PCT