Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00256 ATGTTCAAAATTTACCGCCGCACAACCCTTGGTTGTGCCAAGTTTTTCGAATTCACAACCCTAAAATGGAACCCTCTTTTCCAATTCTGCAGGGCCACCTCCACCTCCAATTCATCCTCTTTCGTGGTCTCGTACCTCGTCAACAACTGTGCCTTCTCCCAAAAAACCGCTCTCAAAGCTTCCCGCAATCTTCATTTTTCGAAACCCCAAAAGCCTGATTCTGTTCTCTCCTTCTTCCGAAACCACTCCTTCTCCAACTCTCAGATATCTCATATCCTCCAAAGAGTGCCCCAGTTACTTTCATGCAACACCCAAAAGTTGCTGTTGCCAAAGTTTGAATTTTTGCGTTCAAAGGGTGCTTCATCCCTTGACATTATTCACGTCGTTACCGCCTGCCCTCATTTTCTCCGACGAAGCTTGGAGAATCGTATAATCCCATCATATGAATTTATTAGAGGGCTCCTTCAACCCTTTATTACGGACAAACAAATCATTGATTTTCTGATTCACCATCCTCCTTTACTTTATGAAAGCCGTGGGGTAGCTAACCTCAAACTGTTGCTTGATAGTGGAGTTCCCGGTTCAAAAATTGTTAAATTGCCCCAGAGATGGCGTCGTCTACTCTACTTTGGCGACATGTCAAAGCCAGTTCAGGAGTTGAAGCAAATGGGCTTCGATGCTTCGCTTTCAACATTCTGCATAGCGTTGGTTGCCAAAATTATCGTAAACGAAAGCAAATGGGCCGAGAAGATTGACACTTATAAGAGGTGGGGTTGGTCCGAAGAACAAGTTCTTCCAGCATTTAGGAGGCAGCCTTATTGTATGCTGTCATCCTGTGATAAAATTAATGCCGTGATGAGTTATTGGGTGGAGCAGGCAGGCTTCAATTCTGTGGACCTTGTCAAACATCCTGGAATTTTCTTACTTAGTCTCCGAAAAAGGATTGCTCCGAGGGCTTGTGTCTTGCAGTTTCTTGTCTCAAAAGGTCTGCTACGGAAGGATCCAAGCTTAACGACACCATTTGTTCTGACTGAGAAGTTGTTCCTGGAAAAATATGTGAAACGTTTTAGGGAAGATTCTTCTCATCTGTTAAAGCTGTACACAGAACATGAGTCTTGGAAATGA 1125 0.4382 MFKIYRRTTLGCAKFFEFTTLKWNPLFQFCRATSTSNSSSFVVSYLVNNCAFSQKTALKASRNLHFSKPQKPDSVLSFFRNHSFSNSQISHILQRVPQLLSCNTQKLLLPKFEFLRSKGASSLDIIHVVTACPHFLRRSLENRIIPSYEFIRGLLQPFITDKQIIDFLIHHPPLLYESRGVANLKLLLDSGVPGSKIVKLPQRWRRLLYFGDMSKPVQELKQMGFDASLSTFCIALVAKIIVNESKWAEKIDTYKRWGWSEEQVLPAFRRQPYCMLSSCDKINAVMSYWVEQAGFNSVDLVKHPGIFLLSLRKRIAPRACVLQFLVSKGLLRKDPSLTTPFVLTEKLFLEKYVKRFREDSSHLLKLYTEHESWK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00256 374 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Vian1g00256 374 SMART mt_12 126 157 IPR003690 GO:0003690|GO:0006355
Vian1g00256 374 SMART mt_12 90 121 IPR003690 GO:0003690|GO:0006355
Vian1g00256 374 SMART mt_12 297 331 IPR003690 GO:0003690|GO:0006355
Vian1g00256 374 PANTHER CGI-12 PROTEIN-RELATED 38 355 IPR003690 GO:0003690|GO:0006355
Vian1g00256 374 Pfam mTERF 235 348 IPR003690 GO:0003690|GO:0006355
Vian1g00256 374 Pfam mTERF 76 226 IPR003690 GO:0003690|GO:0006355
Vian1g00256 374 Gene3D Transcription termination factor 3, mitochondrial 156 365 IPR038538 -
Vian1g00256 374 FunFam Mitochondrial transcription termination factor-like 140 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00256 Vian-Chr1 2267509 2268633 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian1g00256 mTERF 2.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00256 K15032 - gmx:102667698 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00256 1 2267509 2268633 Vian1g00256 1 2267509 2268633 ECH