Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00255 ATGGTGGACAATGTCGGAGGCAGTTCCTCTAATCCTGAAAACAGTGGCATCAGGGAACAAGACCGTCTGTTGCCAATAGCCAATGTTGGAAGGATCATGAAGCAGATTCTGCCTCCTAATGCAAAAATCTCAAAGGAATCAAAGGAAACAATGCAAGAGTGTGTGTCGGAGTTTATAAGCTTTGTGACGAGTGAGGCATCAGAGAAGTGCAGAAAGGAGAGGAGGAAGACCGTGAACGGAGATGATATATGCTGGGCCTTAGGCTCCCTTGGTTTTGATGACTATGCAGACCCATTGAGAAGGTATTTGCACAGATATAGAGAACTAGAAGTAGATAGATCAGCCATCCAAGAGAGAGGAAATAGCCCCTCCAAAGACAAGGATGCTGAATTCTGA 396 0.452 MVDNVGGSSSNPENSGIREQDRLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYADPLRRYLHRYRELEVDRSAIQERGNSPSKDKDAEF 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00255 131 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 114 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vian1g00255 131 Coils Coil 99 119 - -
Vian1g00255 131 SUPERFAMILY Histone-fold 20 128 IPR009072 GO:0046982
Vian1g00255 131 MobiDBLite consensus disorder prediction 1 20 - -
Vian1g00255 131 MobiDBLite consensus disorder prediction 1 17 - -
Vian1g00255 131 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vian1g00255 131 Gene3D Histone, subunit A 11 130 IPR009072 GO:0046982
Vian1g00255 131 FunFam Nuclear transcription factor Y subunit B-3 12 130 - -
Vian1g00255 131 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Vian1g00255 131 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Vian1g00255 131 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Vian1g00255 131 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00255 Vian-Chr1 2258671 2259066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00255 17 124 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.222 1.32e-56 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vian1g00255 CBFD_NFYB_HMF 4.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00255 K08065 - gmx:100786046 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00255 1 2258671 2259066 Vian4g00154 4 1375869 1376237 PCT