Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00249 ATGAAGAAGTTCTCAACCCTAAGAATCCTTCACCATCATCATTCTCTTCTCAATCTCAATCTCAATCTCAATCCACCCTTCTCCGTCTGCTTCAATTTCAATTTTGCCACTGTTCCCCAATCTCACTCCTTCGTTGTCTCCTACCTCGTCTCCACCTGCGGCTTCTCCCCGGAATCCGCCCTCTCCGCCTCCCGCTACCTCCGTTTCAAGAGTTCTCAGAAGCCCGACTCCGTCCTAGCTTTTCTCTCCGAGCATGGCTTCTCCGTCTCTCAAATCCACGCCGTCGTCAAACGGGAAAGTCGCATCCTCCAGTGCAACCCCGACAAAGTCCTCCTCCCCAAGTTCCAGTTCCTCCGCTCCAAAGGCGCCTCCTCTGCCGACATAATCCACATGATCACCGCCGGACCCCGATTCCTCTTAGCCAACCTCAACAGCCACATTGTTCCCGCCTATCACTTGGTCAGAAGTTTCGTCGACTCTGACAAGCAAGTCATCACCTGTCTCAGGCGAAACATCTCCTTCATTGCCGACAGTCGCGTATCTCCCAACGTCCAACTTCTCCTCGACAATGGCGTCAAACGCTCCAGCATCGGTATGATGCTCTCCATGTGGCCCTCTATCCTCTGCTCCCATAACCTGTCCCACACTATTTGTGAATTGAAAGAAATGGGGTTTGACACTTCCAAAACCACCTTCGCCGTGGCCATGATGGCCAAAATGACTGTGAATAAAGCCAAGTGGGTTGACAAGGTTGAGGTTTGTAAGAAGTGGGGGTGGTCGGAGGAGCATGTGCTTGTGGCGTTTAAGAAGCATCCTCATTTCATGTTGAGCTCCCGTGAGAAGATTGATGCCGTATTTAGCTTCTGGGTTGAGGTGTCAGGGTATAGCTCTTTGGAGCTTGTCAAGTATCCTGTTATTATTCAGCTGAGTCTCCCTAAGAGGATTGTTCCCAGGTCTTTGGTTCTGAGATTTCTTGAAAAGGAAGGATTGAGGAAAAAGGGTGCAAGCTATGGCACGCCTCTACTCCCGACGGAGAATGCGTTTCTGAAGAAGTTTGTCTATGGTTTTGAAAAGCATTCTTCTAAGTTGTTGAAGATATATGAGAAAAGTATGAACGAAGGGAATAATAGAGAGGAGTAG 1140 0.493 MKKFSTLRILHHHHSLLNLNLNLNPPFSVCFNFNFATVPQSHSFVVSYLVSTCGFSPESALSASRYLRFKSSQKPDSVLAFLSEHGFSVSQIHAVVKRESRILQCNPDKVLLPKFQFLRSKGASSADIIHMITAGPRFLLANLNSHIVPAYHLVRSFVDSDKQVITCLRRNISFIADSRVSPNVQLLLDNGVKRSSIGMMLSMWPSILCSHNLSHTICELKEMGFDTSKTTFAVAMMAKMTVNKAKWVDKVEVCKKWGWSEEHVLVAFKKHPHFMLSSREKIDAVFSFWVEVSGYSSLELVKYPVIIQLSLPKRIVPRSLVLRFLEKEGLRKKGASYGTPLLPTENAFLKKFVYGFEKHSSKLLKIYEKSMNEGNNREE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00249 379 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Vian1g00249 379 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
Vian1g00249 379 SMART mt_12 162 193 IPR003690 GO:0003690|GO:0006355
Vian1g00249 379 SMART mt_12 297 331 IPR003690 GO:0003690|GO:0006355
Vian1g00249 379 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Vian1g00249 379 SMART mt_12 7 56 IPR003690 GO:0003690|GO:0006355
Vian1g00249 379 SMART mt_12 198 226 IPR003690 GO:0003690|GO:0006355
Vian1g00249 379 Pfam mTERF 178 331 IPR003690 GO:0003690|GO:0006355
Vian1g00249 379 Pfam mTERF 79 181 IPR003690 GO:0003690|GO:0006355
Vian1g00249 379 Gene3D Transcription termination factor 3, mitochondrial 160 360 IPR038538 -
Vian1g00249 379 PANTHER CGI-12 PROTEIN-RELATED 41 354 IPR003690 GO:0003690|GO:0006355
Vian1g00249 379 FunFam Mitochondrial transcription termination factor-like 143 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00249 Vian-Chr1 2156142 2157281 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian1g00249 mTERF 3.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00249 K15032 - gmx:102667698 352.829