Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00246 ATGGAGCGGTACGGCCGGGCCAGCGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACCGTGGCCGGCGCCGACGCCGGCATCGAAGGTGACTCTATCTACATTATCTGTTATTCCTTTCACGATTCTCGATTTGCGCTGAATAATGCAGAGTGTGGTAATAATGGAAGTAGGTTTGATCTTGATTTCGCTAATAATGCAGAGTCCTCGTGGCAACACGGATTGGCAGCTGCCGAATCGTACCCTCTGCGACCCGATGAGGCTGATTGTATCTATTATCTGAGGACGGGATTTTGCGGTTACGGCACACGGTGTCGTTTCAACCATCCCCGTGACCGTGCTGCGGTCATTGGAGCTGCGGCGAGGACTGGAGGGGAGTTTCCGGAGCGCGTGGGGCAGCCTGTGTGCCAGTACTATATGAGGACGGGATCATGCAAGTTTGGTGCATCCTGCAAGTACCACCATCCTAGGCAGGCGGCAGGCAATGCTACCCCTGTGCCACTAAATTATTATGGATATCCGTTGCGAGTGGGAGAGAAAGAGTGTTCCTATTATGTGAAAACTGGACAGTGCAAATTTGGTGCAACTTGTAAATTCCACCATCCCCAGCCTGCAGGTGTCCAAGTTATTGCACCATCACCGGTTCCCGCAGTTTCACATCTGCCTGTTCCGGTACCTTCACCGGTATATCCAACTGTACAGCCCCAATCTGGTCCTTCGCAACAACAATATGGTGTACTTGTTGCAAGGCCTCCTATGCTGCCTGGCTCAGTAGTTCAGGGTCCGTATGGGCCTATGGTGGTGTCTCCTGCCATGGTCCCTTTTTCAGGCTGGGGTCCTTATCAGGCTCCTGCAACAACCCCTGTAATGCCATCTAGCTCTGCGTCTAATGTTGGTTCAACACAGCTTTATGGGATAACCCCACTACCTTCGTCGGCAGCTACTTTCACTGGACCTTATCAGCCTTCTGGTTCCTCAGTTGGTCCTTCAGGTGCTATTCAGAAGGAGCATCCATTTCCAGAAAGACCTGATCAACCAGAATGTCATTATTACATGAAAACAGGGGAGTGCAAATTTGGTCCATCTTGCAGATATCATCATCCACCAGACAAGGGAGCACCTAAAGCAAATGTAATCCTTAGTCCTGTGGGTCTTCCTTTGCGTCCGGGGGCACCGCCTTGCACTCATTATACACAGCGTGGAGTTTGCAAATTTGGTTCTGCATGCAAATTCGATCATCCTATGGGATCACTTAGCTACAGTCCATCTGCCTCTTCCCTGGCTGACATGCCAGTTGCACCCTATCCTGTGGGTTCCTCAATCGGTACTCTTGCTCCGTCATCTTCATCCTCAGAGTTGCGGCCTGAACTTGGTGCAGGAGTCAGTAAGGAGTCTGTTTCGTCCAGAATGTCTTCAATGAGCACATCAACCGGATCAGTTGGTTTGACCTTGTCAAGCGTTGGACCCATTTCTCATTCAAGCACCCAACCATCTGCTCAGAGTTCCAGTTCTTCAGCAACTACCAGTGCTACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA 1566 0.5109 MERYGRASEGSQSDPSPEWTVAGADAGIEGDSIYIICYSFHDSRFALNNAECGNNGSRFDLDFANNAESSWQHGLAAAESYPLRPDEADCIYYLRTGFCGYGTRCRFNHPRDRAAVIGAAARTGGEFPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAAGNATPVPLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGVQVIAPSPVPAVSHLPVPVPSPVYPTVQPQSGPSQQQYGVLVARPPMLPGSVVQGPYGPMVVSPAMVPFSGWGPYQAPATTPVMPSSSASNVGSTQLYGITPLPSSAATFTGPYQPSGSSVGPSGAIQKEHPFPERPDQPECHYYMKTGECKFGPSCRYHHPPDKGAPKANVILSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELGAGVSKESVSSRMSSMSTSTGSVGLTLSSVGPISHSSTQPSAQSSSSSATTSATTSSTVSHTSS 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00246 521 Gene3D - 342 419 - -
Vian1g00246 521 ProSiteProfiles Zinc finger C3H1-type profile. 342 370 IPR000571 GO:0046872
Vian1g00246 521 PANTHER PROTEIN PHOSPHATASE RELATED 72 450 - -
Vian1g00246 521 SUPERFAMILY CCCH zinc finger 177 204 IPR036855 GO:0046872
Vian1g00246 521 MobiDBLite consensus disorder prediction 318 341 - -
Vian1g00246 521 SUPERFAMILY CCCH zinc finger 133 158 IPR036855 GO:0046872
Vian1g00246 521 MobiDBLite consensus disorder prediction 1 22 - -
Vian1g00246 521 MobiDBLite consensus disorder prediction 443 521 - -
Vian1g00246 521 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 157 IPR000571 GO:0046872
Vian1g00246 521 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 344 369 IPR000571 GO:0046872
Vian1g00246 521 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 111 IPR000571 GO:0046872
Vian1g00246 521 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 179 203 IPR000571 GO:0046872
Vian1g00246 521 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 391 415 IPR000571 GO:0046872
Vian1g00246 521 SUPERFAMILY CCCH zinc finger 87 113 IPR036855 GO:0046872
Vian1g00246 521 SUPERFAMILY CCCH zinc finger 345 370 IPR036855 GO:0046872
Vian1g00246 521 ProSiteProfiles Zinc finger C3H1-type profile. 176 204 IPR000571 GO:0046872
Vian1g00246 521 SMART c3hfinal6 84 111 IPR000571 GO:0046872
Vian1g00246 521 SMART c3hfinal6 178 203 IPR000571 GO:0046872
Vian1g00246 521 SMART c3hfinal6 388 415 IPR000571 GO:0046872
Vian1g00246 521 SMART c3hfinal6 130 157 IPR000571 GO:0046872
Vian1g00246 521 SMART c3hfinal6 342 369 IPR000571 GO:0046872
Vian1g00246 521 SUPERFAMILY CCCH zinc finger 392 418 IPR036855 GO:0046872
Vian1g00246 521 FunFam CCCH type zinc finger protein 340 425 - -
Vian1g00246 521 Gene3D - 84 161 - -
Vian1g00246 521 ProSiteProfiles Zinc finger C3H1-type profile. 130 158 IPR000571 GO:0046872
Vian1g00246 521 ProSiteProfiles Zinc finger C3H1-type profile. 388 416 IPR000571 GO:0046872
Vian1g00246 521 Gene3D - 162 213 - -
Vian1g00246 521 MobiDBLite consensus disorder prediction 464 521 - -
Vian1g00246 521 ProSiteProfiles Zinc finger C3H1-type profile. 84 112 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00246 Vian-Chr1 2138237 2142290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00246 1 487 C2H2 Transcription Factor Family AT5G18550 52.525 6.29e-152 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian1g00246 zf-CCCH 1.7e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00246 - - gmx:100789405 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00246 1 2138237 2142290 Vian6g01540 6 33019819 33030595 PCT