Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00239 ATGGGTTGTGTTCTCTCTTGCCTTAATGGATCAACAACCATGGAGGAATCTGAGGAAAGAACACTTATTGCTCTTGGCTCTACCACAGATAGAAGAGCAAGATCAGAGAGTCCAATTGCCATTAAACGTGCGAAAGCATTTTCATTCAGAGAGCTTGCAGCAGCTACAAAGAATTTCAGGTCAAGACTTCTGTTAGGTAGAGGAGGCTTTGGGAGTGTGTACAAAGGTCAACTCAAAAACGGCCAAGATGTTGCTGTGAAAGTGCTTGAAAAAATTTCCCAACAAGAAGACCAAGAGTTTGTCACCGGGGTTGAGATGCTGTCTCTCTTGTATCACCCAAATCTTGTGACACTGATTGGTTATTGTTGCGAACGTGACCAGCGGCTCATTGTTTACGAGTATATGCCGTTGGGGTCCTTGGAGAATCATTTATTCGATCGTCCTCTTGGCAGGGAACCACTTGACTGGAATACAAGGATGAAGATAGCAAGCGGTGTGGCAAAGGGATTGGAGTATTTGGAGATTTGGAGAGACCTTCCTGTGATGTTTGGAGAGCTCAGATCATCGAACATCCTCCTGGACGAGGGTTATCATCCCAAGTTGTCTTATTTTGGGATACCGAAATTTGGTAATAGCAGTCATGTTTCAACAGGATTAGTGGGAACATATGGTTACTGTGCCCCAGAATATGCAGTCACCGGCAACCTAACTCCGGAATGTAAGGTCTACGGTTTGGGAGTGGTCCTTCTGGAACTCATTTCGGGGCGTAAGGCCATTGATAAGAGTCGTTCCCCTGAAACGTGCCATCTTGTTAAGTGGGCACAACCTATTTTGAAGGACATTAGTGAGTATCATAGATTGGTGGATCCTCTACTTCACGGGTCTTATCCAGTGGAATGGCTTAATCAGGCGATTGTTATTGCAGCTATGTGTTTGCATGAAAAAGCTGATAGAAGGCCTACGATACGGGAAGTGGTGTCTGCTCTAACGTACATTGAATCACAGCAAAAACAGTGTAACAGAAGGGGTCGACATCCATGCTCTTTCTTCTACCCATCTCTTGTCAGAAAAGAAAGTGGATTGGAAAAAGAACGGAAGAAAGGGGAATTTGAGAGAGGCAGTACCGGTTATGGTGCAGATAGTGGAAAGCAAGTAGTTGGGTACATAGAAATGCTAGAGATATGA 1185 0.4456 MGCVLSCLNGSTTMEESEERTLIALGSTTDRRARSESPIAIKRAKAFSFRELAAATKNFRSRLLLGRGGFGSVYKGQLKNGQDVAVKVLEKISQQEDQEFVTGVEMLSLLYHPNLVTLIGYCCERDQRLIVYEYMPLGSLENHLFDRPLGREPLDWNTRMKIASGVAKGLEYLEIWRDLPVMFGELRSSNILLDEGYHPKLSYFGIPKFGNSSHVSTGLVGTYGYCAPEYAVTGNLTPECKVYGLGVVLLELISGRKAIDKSRSPETCHLVKWAQPILKDISEYHRLVDPLLHGSYPVEWLNQAIVIAAMCLHEKADRRPTIREVVSALTYIESQQKQCNRRGRHPCSFFYPSLVRKESGLEKERKKGEFERGSTGYGADSGKQVVGYIEMLEI 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00239 394 Gene3D Transferase(Phosphotransferase) domain 1 135 349 - -
Vian1g00239 394 SUPERFAMILY Protein kinase-like (PK-like) 36 331 IPR011009 -
Vian1g00239 394 Pfam Protein tyrosine and serine/threonine kinase 64 329 IPR001245 GO:0004672|GO:0006468
Vian1g00239 394 ProSitePatterns Protein kinases ATP-binding region signature. 65 87 IPR017441 GO:0005524
Vian1g00239 394 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 135 343 - -
Vian1g00239 394 ProSiteProfiles Protein kinase domain profile. 59 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00239 394 FunFam Somatic embryogenesis receptor kinase 1 28 134 - -
Vian1g00239 394 Gene3D Phosphorylase Kinase; domain 1 29 134 - -
Vian1g00239 394 PANTHER OS07G0668900 PROTEIN 36 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00239 Vian-Chr1 2075073 2076995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00239 44 332 Glycoside Hydrolase AT3G07070 53.925 1.81e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vian1g00239 PK_Tyr_Ser-Thr 9.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00239 - - var:108330065 754.977