Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00234 ATGGAGGTGTTTATAAGAGAAGCAGGTATGGTGTGGAAAGCAGAGAGCAAAGAAATGGGAAAAGCAGTTACTCTGAGTGCTTCTGATTTGCTTATGAGGCTTTTGGCCTTCATTCTCACTCTTGCTGCTGCCATAGTTATTGCAACAGATAAACAGACTAAGGTTGTTCCCATTCAGATCTCAGATTCCTTACCACCTTTTCATCTTCCTCTTACTGCTAAGTGGGATCAGATGTCTGCTATTCTGTATTTTCTGGTGACCAATGCAATAGCATGCACGTATGGAGCTTTGACTCTAGTTGTTGCCGTAGTGAACAGAGGTAAAAGTAAAGGCTTGTGGACAGTGATGACTGTTCTGGACGCATTCATGGTGGCTTTGCTATTTTCCGGCAATGGTGCCGCGGCGGCGGTGGGTGTCCTTGGCTACAAAGGAAACTCCCATGTGAATTGGAAAAAAGTGTGCAATGTGTTTGATAAATTCTGTGGTCAAATGGCTGTTTCAATCGGTGTGTCGTTGATCGGATCGTTGGCATTTCTCTTGCTTGTGGTTATTCCTGTGATGCAAGGTCACACTACGAAAAAGGAAACTGAAACTCACTCTACCATGCCACCATTCTCTCAAATCCCACCTTCTTCTTCTTCTTTTCTTCACCCTTCAACCATTGCCGAAGCAACTGCTAACACCACCAGCAGAAAGCGTGTTAAGAGAACGAGTCACTCCAATTGTGGGAGCGTTAACATGGAACGTGAAAGAAGGTCCAAGATGACTCAAATGTTCACTCAGCTTCAAACCTCTGTCCCTGGTCTCTTACCTCAGGCCACAAGAGAAGTGATAATAAACGAGACAATTGGGTACATAAAGGAGCTTGAGAAGAAGAAGCAGAGATTGGAGGAGTTGAAGAAGTTGAAGGAGACCATGAAAGGTGTGGAAGGATCAACGGTTGAATGTGGTAACAATAATAGAAATTGTTCACTCGTGGTTACTGTTTCTGATAATGTTGCATTCTTTGGTATTCAATGGATGCCTCGACCAGGTTTGGTGACACAAATTTTGAAGGTGTTTTGCAATCACCAAGCAGAGATTTTGGCTGCAAATGTGACTGTTAATAATGGGAAATTGATATTGGCAATCACAGCTTTGGTGCAAAACAATGGAAACTGTGTGGTTGAAAAGATTAAAAGAGAAATTATGGGTTTGTAG 1200 0.4283 MEVFIREAGMVWKAESKEMGKAVTLSASDLLMRLLAFILTLAAAIVIATDKQTKVVPIQISDSLPPFHLPLTAKWDQMSAILYFLVTNAIACTYGALTLVVAVVNRGKSKGLWTVMTVLDAFMVALLFSGNGAAAAVGVLGYKGNSHVNWKKVCNVFDKFCGQMAVSIGVSLIGSLAFLLLVVIPVMQGHTTKKETETHSTMPPFSQIPPSSSSFLHPSTIAEATANTTSRKRVKRTSHSNCGSVNMERERRSKMTQMFTQLQTSVPGLLPQATREVIINETIGYIKELEKKKQRLEELKKLKETMKGVEGSTVECGNNNRNCSLVVTVSDNVAFFGIQWMPRPGLVTQILKVFCNHQAEILAANVTVNNGKLILAITALVQNNGNCVVEKIKREIMGL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00234 399 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 289 IPR011598 GO:0046983
Vian1g00234 399 Gene3D - 225 316 IPR036638 GO:0046983
Vian1g00234 399 MobiDBLite consensus disorder prediction 198 214 - -
Vian1g00234 399 NCBIfam plant integral membrane protein TIGR01569 30 186 IPR006459 -
Vian1g00234 399 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 246 301 IPR036638 GO:0046983
Vian1g00234 399 PANTHER CASP-LIKE PROTEIN 1U1 16 197 IPR044173 -
Vian1g00234 399 MobiDBLite consensus disorder prediction 195 214 - -
Vian1g00234 399 Pfam Casparian strip membrane protein domain 25 176 IPR006702 -
Vian1g00234 399 Coils Coil 279 309 - -
Vian1g00234 399 SMART finulus 245 295 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00234 Vian-Chr1 2041846 2045830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00234 210 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.922 6.32e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00234 - - var:108338400 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00234 1 2041846 2045830 Vian1g00234 1 2041846 2045830 ECH