Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00228 ATGGATGAAGGGTTGGAGCAGAGTTGGTGGGCCAACATGCCCCATGAGCTTCTCAGAGAGGTCCTCCTCCGAATTGAGTCGTCGGAGGCCAAGTGGCCACGGCGGAGAAGCGTGGTGGCTTGCGCCGGAGTCTGCCGTACCTGGAGGCTGATCATCAAGGAGATTGTCAAGCCACCTCAACTCTCTTCCAACATAACATTCCCCATCTCTCTCAAACAGCCTGGCCCAAGGGAACATCTACTTCAGTGCTTCATTAGGCGCGATAATGGCACACAGACATATTACCTGTTTCTCAGTTTATCTAGTGCACTAGCTGATGATGGGAAATTCCTTTTAGCCGCGCGAAAGTTCAGACGCCCAACCTGCACAGATTATATTATCTCCCTGGATGCGGATTATATGTCCAGGGAAAGCAATGCCTACATAGGGAAATTGAGATCAAATTTTTTGGGAACCAAGTTCACAGTGTACGATGTCCAACTGCCTCATTCAAGGGCAAATATGGCAAAAAGTTGCTCCACTAAGCTCGTGAATCCGAAACAAGTTTCACCCAAGGTCCCTACAGGCAACTACCCAGTTGCCCATATCTCATATGAATTGAATGTATTAGGCTCCAGGGGGCCCAGGAGAATGCATTGTGTCATAGATAGCATTCCTGCTTCTGCTATTGAACCAGAACGGGTAGCTCCTTCACAGACCAGTTATTCTGTTAGTAACTTAGGTACTTCATTCCCATTTTTTCAGACAAACTCAACTCATATGGAAAACTCCATATCTGGAGAGCAGAACAATAAAAGAGATGACGTTCTAGTGTTGAGAAATAAGGCTGCCAGGTGGCATGAGCAGATGCAGTGTTGGTGCTTAAACTTTCATGGGCGAGTGACAGTTGCTTCAGTTAAAAACTTTCAGCTGGCTGCTTTGCCAGTAAATGGACATGCTGAACCACAAGAGGATGATGTCATCCTCCAATTTGGAAAAGTTGGGAAGGACTTGTTTACAATGGATTACCGGTACCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGCTACCACGGTTGCTTGCGAATGA 1083 0.4681 MDEGLEQSWWANMPHELLREVLLRIESSEAKWPRRRSVVACAGVCRTWRLIIKEIVKPPQLSSNITFPISLKQPGPREHLLQCFIRRDNGTQTYYLFLSLSSALADDGKFLLAARKFRRPTCTDYIISLDADYMSRESNAYIGKLRSNFLGTKFTVYDVQLPHSRANMAKSCSTKLVNPKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVIDSIPASAIEPERVAPSQTSYSVSNLGTSFPFFQTNSTHMENSISGEQNNKRDDVLVLRNKAARWHEQMQCWCLNFHGRVTVASVKNFQLAALPVNGHAEPQEDDVILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFATTVACE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00228 360 SUPERFAMILY F-box domain 4 54 IPR036047 GO:0005515
Vian1g00228 360 ProSitePatterns Tub family signature 1. 290 303 IPR018066 -
Vian1g00228 360 SUPERFAMILY Tubby C-terminal domain-like 59 360 IPR025659 -
Vian1g00228 360 CDD F-box_AtTLP-like 10 54 - -
Vian1g00228 360 PRINTS Tubby superfamily signature 141 165 IPR000007 -
Vian1g00228 360 PRINTS Tubby superfamily signature 125 141 IPR000007 -
Vian1g00228 360 PRINTS Tubby superfamily signature 190 217 IPR000007 -
Vian1g00228 360 PRINTS Tubby superfamily signature 290 306 IPR000007 -
Vian1g00228 360 PRINTS Tubby superfamily signature 317 336 IPR000007 -
Vian1g00228 360 PRINTS Tubby superfamily signature 338 360 IPR000007 -
Vian1g00228 360 PRINTS Tubby superfamily signature 272 289 IPR000007 -
Vian1g00228 360 PANTHER TUBBY-RELATED 7 357 - -
Vian1g00228 360 Pfam Tub family 71 355 IPR000007 -
Vian1g00228 360 Gene3D Tubby Protein; Chain A 68 360 IPR025659 -
Vian1g00228 360 FunFam Tubby-like F-box protein 67 360 - -
Vian1g00228 360 Pfam F-box domain 10 56 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00228 Vian-Chr1 1996872 1998835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00228 3 360 TUB Transcription Factor Family AT2G47900 65.014 1.08e-172 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vian1g00228 Tub 1.6e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00228 K19600 - gmx:100794141 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00228 1 1996872 1998835 Vian1g00228 1 1996872 1998835 ECH
Vian1g00228 1 1996872 1998835 Vian6g01522 6 32831851 32835535 PCT