Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00227 ATGTCTACCATGCCTGTTGGAGCAATGTTCCAGAAACTCACCACATTCATGACCTCTGATCATGCTTCTGTTGTTTCCATGAACATTTTTGTTGCCCTTCTGTGTGCTTGCATCATCATCGGTCACCTGTTGGAAGAGAACCGATGGATCAATGAATCCATCACTGCCCTTCTAATGGGTCTTTGTACTGGGGTCTTTATACTGCTTACCACTGGAGGAAAAAGCTCTCATATACTAGTCTTCAGTGAAGATCTTTTCTTCATTTACCTTCTCCCACCCATCATTTTCAATGCCGGGTTTCAAGTGAAGAAGAAACAATTTTTCCGCAACTTTATGACTATTATGCTCTTTGGTGCAGTTGGTACTTTGATATCATTCTGCATCATATCACTGGGTGCCATACATTTTTTTCAGAAGTTGGACATTGATTCCCTCAAGATTGGAGATTTTCTTGCAATTGGAGCAATATTTTCAGCAACAGATTCAGTTTGCACGTTGCAGGTTCTTAATCAGGATGAGACTCCTTTACTATATAGCCTGGTCTTTGGGGAAGGAGTAGTCAATGATGCTACCTCTGTAGTGCTCTTCAAAGCAATTCAAAATTTTGACCTCTCTCACATTGACTCAAATACTGCCTTACACTTGGGATCATTGGTGTTTCTTTTCGGTTTTCAGGCTGGATTGCTTAGTGCTTACATAATAAAAAAACTCTATTTTGACAAGCTAATAAGGCATTCTACAGACCGTGAGGTTGCTCTCATGGTACTCATGGCATACCTTTCGTATATGCTGGCTGAACTATTTTCTTTGAGTGCCATTCTGACCGTTTTCTTCTGCGGAATTGTGATGTCTCACTACACCTGGCATAATGTAACTGAAAGTTCAAGGGTGACAACAAAGCATGTTTTTGCCACTTTGTCATTCATTGCTGAAATCTTCATCTTCCTCTATGTGGGGATGGACGCATTAGATATAGAGAAGTGGCGAATCGTAAGTGAAAGCCCAAGAAAATCTATTGGGGTCAGTTCGTTGCTGTTGGCACTTATTCTAGTGGGAAGAGCTGCATTTGTTTTCCCTCTGTCCTTCTTATCCAACTTGTTTAAGAAGTCTCAATCTGAGAAAATTGAGTTAAAGCAACAAGTAACAATTTGGTGGGCTGGTCTCATGCGTGGAGCAGTTTCTATCGCACTTGCTTACAATCAGGTGAAGGAATCAAACTTCATTGCTTTCAATTCTTCTCCTCTATGGCTAAGCATTTGGGTTGATGACAAAGCCACTTGTAAGGCTATTGCTTCCTTCGTCAAAGCATGTGATGACCTTTGCGTCCCCACCATCGACACCAAAATCATTCACAGTGCCACTTCTTGGCAGTGGAAGAGAGGATTCATCATGGACCAATGGTGGCACCCCAAATGGGCCTCCTCCAACCACCACCTTTAG 1440 0.4194 MSTMPVGAMFQKLTTFMTSDHASVVSMNIFVALLCACIIIGHLLEENRWINESITALLMGLCTGVFILLTTGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFCIISLGAIHFFQKLDIDSLKIGDFLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAIQNFDLSHIDSNTALHLGSLVFLFGFQAGLLSAYIIKKLYFDKLIRHSTDREVALMVLMAYLSYMLAELFSLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHVFATLSFIAEIFIFLYVGMDALDIEKWRIVSESPRKSIGVSSLLLALILVGRAAFVFPLSFLSNLFKKSQSEKIELKQQVTIWWAGLMRGAVSIALAYNQVKESNFIAFNSSPLWLSIWVDDKATCKAIASFVKACDDLCVPTIDTKIIHSATSWQWKRGFIMDQWWHPKWASSNHHL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00227 479 Pfam Sodium/hydrogen exchanger family 29 399 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vian1g00227 479 Gene3D - 146 198 - -
Vian1g00227 479 PANTHER SODIUM/HYDROGEN EXCHANGER 19 404 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vian1g00227 479 PRINTS Na+/H+ exchanger signature 114 122 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vian1g00227 479 PRINTS Na+/H+ exchanger signature 154 164 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vian1g00227 479 PRINTS Na+/H+ exchanger signature 99 113 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vian1g00227 479 PRINTS Na+/H+ exchanger signature 85 96 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00227 Vian-Chr1 1981264 1984357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00227 9 406 Antiporters AT3G05030 76.773 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00227 - - ccaj:109808409 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00227 1 1981264 1984357 Vian1g00227 1 1981264 1984357 ECH