Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00217 ATGGGCAGGTATCGAAGCCGGAGCAGAAGCTATAGTCCTCGGCGACGCAGCAGAACCCCGCCGCCACCTCCGTCACGTGGTCGCAAGCGCCATGTCGACGAACGCTACGGTGACAGCAGGTCGTACAGGGACCGCCGCTCACCTCTTCCTTCTGGTTTACTCGTTCGCAATCTTCCCCTCGATGCCAGGCCTGAGGATCTTAGGATCCCTTTTGAGCGCTATGGTCCTGTGAAGGATGTTTATCTACCAAAAAATTACTACACTGGTGAACCACGGGGCTTTGGATTTGTGAAATATCGATATGGTGAAGATGCAGCTGAGGCAAAACAACATCTTAATCATACTATCATTGGTGGACGTGAAATAAGAATTGTTTTTGCTGAGGAAAACAGGAAAACTCCTCAAGAAATGCGTCTTAGTTCTCGAGGAAGTTCTCGACATGGGGGTGGTAGAAGGAGAAATAGATCTAGATCCCCACAACGCCGACATCGATCCTATTCTCGGTCTCCATCACCTGCTAGGGATGATTCAAGGGATGACAGAGGTAGGGATGATTATTATTCTCCAGAGCGATCAAGATCTTATTCTAGGTCTCTCTCCCCTAGTGGTGGGAAGGACTACAGGAAGTCCCCTCGGGAGAACGGTCGGAGTCCTGGTGACAAGAAGGCTCAGACGCCTAGCAGATCCCAGAGCCCTAGGGGTAATGATCGCAGTCCTTCAAGGTCTCGTTCACGGTCATACAGTCCACGCTGA 753 0.51 MGRYRSRSRSYSPRRRSRTPPPPPSRGRKRHVDERYGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHTIIGGREIRIVFAEENRKTPQEMRLSSRGSSRHGGGRRRNRSRSPQRRHRSYSRSPSPARDDSRDDRGRDDYYSPERSRSYSRSLSPSGGKDYRKSPRENGRSPGDKKAQTPSRSQSPRGNDRSPSRSRSRSYSPR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00217 250 SMART rrm1_1 52 125 IPR000504 GO:0003723
Vian1g00217 250 MobiDBLite consensus disorder prediction 1 49 - -
Vian1g00217 250 MobiDBLite consensus disorder prediction 220 250 - -
Vian1g00217 250 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 52 243 - -
Vian1g00217 250 SUPERFAMILY RNA-binding domain, RBD 53 157 IPR035979 GO:0003676
Vian1g00217 250 MobiDBLite consensus disorder prediction 145 164 - -
Vian1g00217 250 Gene3D - 43 170 IPR012677 -
Vian1g00217 250 MobiDBLite consensus disorder prediction 129 250 - -
Vian1g00217 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Vian1g00217 250 MobiDBLite consensus disorder prediction 26 45 - -
Vian1g00217 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 123 IPR000504 GO:0003723
Vian1g00217 250 MobiDBLite consensus disorder prediction 168 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00217 Vian-Chr1 1894719 1898901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00217 55 113 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 1.60e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00217 K12900 - gmx:100788749 267.7