Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00215 ATGGAATCAGAGAGATACACCAGTCAGCGGTGGCGTCCTACTGAAGACCAGATCAAGATGATGACCACCATCTACAATTACGGGGTCACACATCCCAGCAGAGCCCAAGTCGTCGAGATTACGTCTCGACTAAGGATTTTCGGAGATGCCAGCGAATATAATGTGCACTGCTGGTTCAACAATCATGGGAATAGAGTAAGACGTTGGCAAGCGGAATTGGACCCCACCGGCACCATCTTTTCTCTACTACCCCAGTACATGTATGAAACCGGTTGGGTAATCATGAAGGCGCCGAGGCTGCTGGATTTGTTCCCCGTTCCGATCATCATCGACGACGACAGAGACGAACGGCAAATCCCTCCACCCATGCTTCTCACCTTCCGAACCAAAGCTCCTTCGACGGAGCTCTCCCTTAGACCACCACAACCAGCTCGGGAATTTTTTCGTTGA 450 0.5111 MESERYTSQRWRPTEDQIKMMTTIYNYGVTHPSRAQVVEITSRLRIFGDASEYNVHCWFNNHGNRVRRWQAELDPTGTIFSLLPQYMYETGWVIMKAPRLLDLFPVPIIIDDDRDERQIPPPMLLTFRTKAPSTELSLRPPQPAREFFR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00215 149 Gene3D - 8 73 - -
Vian1g00215 149 PANTHER WUSCHEL-RELATED HOMEOBOX 13 7 71 IPR044559 GO:0003700
Vian1g00215 149 Pfam Homeodomain 8 68 IPR001356 GO:0003677
Vian1g00215 149 SUPERFAMILY Homeodomain-like 9 70 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00215 Vian-Chr1 1874958 1875527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00215 7 72 Wox Gene Family AT5G59340 42.424 7.35e-13 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian1g00215 Homeodomain 5.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00215 - K09593 vum:124821070 271.552