Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00200 ATGGGTTGTGCCCATGGCAAGTGTTGCTGTGGCGAACATACTTCATCAGAGGATGGTTCCAGGGATTACCGAGAAACTGGCTTCGTTCGTAGCCACAGGAAAAACATAATCGCACAGAGATCACTGAAGCGTGCTCCTGTTCCTTCTCACAACTTCATTTTGGAATACACTTTTCTCACTCAGCGGGGGTACTACCCCGACTCACCTGATAAAGCAAACCAAGATAGTTTTTGCATTAGTACAAATCTCCAAGGTAACCCCAATGTTCATTTCTTTGGCGTCTATGATGGGCATGGTCAATTCGGTAGTCAGTGTTCAAATTTCGTTAAGGATAGGCTGGTAGAGAAGTTGGTAAATGACCCTGCATTCTTGGAGGATCCTGTCCAAGCTTACAATTATGCATTTTTGGCAACGAACCAAGAATTACGTAGTAGTAGTGAGATTGATGATTCTATGAGTGGCACCACCGCGATAACGGTGCTTGTTATTGGTGACACCCTTTATGTTGCTAATGTTGGTGATTCGAGAGCGGTGCTGGCTGTTAAGGATGGGAACCGCATTGTCGCGGAGGACTTGTCTTCTGATCAGACGCCGTTTCGGAAAGATGAATATGAGAGAGTGAAGCTTTGTGGGGCAAGGGTTTTGAGTGTTGATCAGGTGGAAGGGCTCAAGGATCCAGATATCCAGAGTTGGGGTGATGAAGAGAGTCGGGGTGGTGATCCCCCCAGATTGTGGGTTCCTAATGGGATGTATCCTGGAACTGCTTTTACGAGGAGTATAGGGGATAGTTTAGCAGAGACAATTGGTGTCACTGCTCTTCCTGAGGTGAAAACTTTTCAGCTTACACCTGATCATCTTTTCTTTGTGGTGGCAAGTGATGGCATATTTGAATTCCTGACAAGCCAAACTGTCATTGATATGGCAGCAAGCTATATGGATCCTCGCGATGCATGTGCGGCTATTGCAGAAAAGTCATATAAACTATGGTTGGAACTTGAGAACAGAACAGATGATATAACAATTATCATTGTTCAGATCAAAGGTTTCTGTAATTCAGGTACATTTAGAGTTGGATCAGATGACATAAATGTTGGCGCTGTGCTGAATTCCAGGACAGGAACTCCTGAGATACCCGCTGCGCATGAATCTGATGTTCATCGTTCTGTCAGAACCAGTTTCTCAGAGTTGCACTCTGATCAGCCTGCGGCTTCAGTGGTGGGCCCAGTTCACTCTGCAGAATGTCCAAGACCAATTGAATGA 1260 0.454 MGCAHGKCCCGEHTSSEDGSRDYRETGFVRSHRKNIIAQRSLKRAPVPSHNFILEYTFLTQRGYYPDSPDKANQDSFCISTNLQGNPNVHFFGVYDGHGQFGSQCSNFVKDRLVEKLVNDPAFLEDPVQAYNYAFLATNQELRSSSEIDDSMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRKDEYERVKLCGARVLSVDQVEGLKDPDIQSWGDEESRGGDPPRLWVPNGMYPGTAFTRSIGDSLAETIGVTALPEVKTFQLTPDHLFFVVASDGIFEFLTSQTVIDMAASYMDPRDACAAIAEKSYKLWLELENRTDDITIIIVQIKGFCNSGTFRVGSDDINVGAVLNSRTGTPEIPAAHESDVHRSVRTSFSELHSDQPAASVVGPVHSAECPRPIE 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00200 419 ProSiteProfiles PPM-type phosphatase domain profile. 55 346 IPR001932 -
Vian1g00200 419 PANTHER PROTEIN PHOSPHATASE 72 345 IPR015655 GO:0004722|GO:0006470
Vian1g00200 419 Gene3D - 53 348 IPR036457 -
Vian1g00200 419 SMART PP2C_SIG_2 74 346 IPR001932 -
Vian1g00200 419 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Vian1g00200 419 SUPERFAMILY PP2C-like 47 348 IPR036457 -
Vian1g00200 419 Pfam Protein phosphatase 2C 78 324 IPR001932 -
Vian1g00200 419 MobiDBLite consensus disorder prediction 398 419 - -
Vian1g00200 419 CDD PP2Cc 71 346 IPR001932 -
Vian1g00200 419 SMART PP2C_4 51 344 IPR001932 -
Vian1g00200 419 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00200 Vian-Chr1 1754108 1756408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00200 1 351 PP2C-type Phosphatase Gene Family AT3G06270 68.555 4.03e-172 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00200 - - gmx:100797866 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00200 1 1754108 1756408 Vian1g00200 1 1754108 1756408 ECH