Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00187 ATGCCTCATGATCAGAGAAAAAAGTCATCTGTAGATGTAGACTTCTTTACAGAATATGGCGAAGGGAGTAGATACAGAATAGAGGAAGTGATTGGCAAAGGAAGCTATGGTGTTGTTTGCTCTGCTTATGATACACACACAGGAGAGAAGGTTGCAATAAAGAAAATCAATGACATATTTGAACACGTTTCTGATGCCACCCGCATCCTTCGTGAGATCAAGCTTCTTAGACTCTTACGCCATCCTGATATTGTGGAGATCAAGCATATTTTATTACCTCCTTCTAGAAGGGAGTTCAAAGATATATATGTTGTATTTGAACTTATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATTTGACTGCAGAGCATTACCAGTTTTTTCTCTATCAGCTTCTTCGAGGCTTAAAGTATATACACACAGCAAATGTTTTTCACCGAGATCTGAAGCCGAAAAATATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGTGACTTTGGTCTTGCCAGAGTGGCTTTCAATGATACACCAACTGCTATATTTTGGACAGATTATGTTGCTACACGGTGGTATAGGGCTCCTGAATTGTGTGGATCCTTTTTCTCCAAGTATACCCCTGCTATAGACATATGGAGCATTGGCTGCATTTTCGCAGAACTTTTAACCGGGAAACCTCTTTTCCCAGGAAAGAATGTTGTCCATCAATTAGACCTCATGACTGATTTTCTTGGAACACCCTCTCCTGAAGCCATTGCTAGGGTACGGAATGAGAAAGCTCGAAGATACTTGAGTAGTATGCGCAAGAAGAAGCCAGTTCCTTTCTCTCAAAAGTTTCCCAATGTAGATCCCCTTGCTCTTCGGGTTTTAGAAAGAATGCTGGCATTTGAACCTAATGATCGACCTACTGCTGACGAGGCTCTAGCAGATCCATATTTTAAAGGCTTGGCCAAAGTTGAGAGAGAGCCTTGTTCTCAGCCAGTTACCAAGATGGAGTTTGAATTTGAGAGACGTAGAATAACAAAGGAAGACGTGCGAGAGCTTATATACCGAGAGATTCTGGAATACCATCCAAAGATGTTAAAAGAACATCTAAACGGAGAAGAGCCAACAGGATTCATGTATCCAAGTGCCGTGGACCATTTCAAAAAACAATTTGCATATCTTGAAGAGCATTATGGAAAAGATGGAACTGTTACTCCACCTGAGAGGCAACATGCATCATTACCCAGGCCATGTGTGTTGTATTCAGATAACGAAAGGCAAAATATGGCAGTGGTTGCGGATGATCTCTCCAAGTGTAGCATCAAAGAAGTTGAGAAGCCAGCGATAGACAAGACCGGTGGTATCCCAATGACCAGGCTTCCTTTACCAGCTCCTCAAAATATTAAAGGTGTTGCTGCACGTCCAGGAAAAGTTGTAGGTTCAGTACTGCATTACAACAACAGTGGGGTGGCCGGGACTGAGCAGCGGAAGACGGGTAAAAACTCATCTGTTTCAGCCAAGTATGCTGCTCAAAGCTGTTCATATCCAAGAAGAAACCCAAACTGTAAAATTGAGAGGGCAGTTGAAGGAATTGAAGGTGCTAATGGACTTCAGACAAAGCCTCAATATCTAGCACGCAAAGTTGCTGCTGCTCAAGGGGGACCTGGTGGTAGTTGGTATTGA 1677 0.4222 MPHDQRKKSSVDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTAEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPSPEAIARVRNEKARRYLSSMRKKKPVPFSQKFPNVDPLALRVLERMLAFEPNDRPTADEALADPYFKGLAKVEREPCSQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEHLNGEEPTGFMYPSAVDHFKKQFAYLEEHYGKDGTVTPPERQHASLPRPCVLYSDNERQNMAVVADDLSKCSIKEVEKPAIDKTGGIPMTRLPLPAPQNIKGVAARPGKVVGSVLHYNNSGVAGTEQRKTGKNSSVSAKYAAQSCSYPRRNPNCKIERAVEGIEGANGLQTKPQYLARKVAAAQGGPGGSWY 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00187 558 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00187 558 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Vian1g00187 558 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vian1g00187 558 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vian1g00187 558 FunFam Mitogen-activated protein kinase 111 339 - -
Vian1g00187 558 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 360 - -
Vian1g00187 558 CDD STKc_TDY_MAPK 24 361 - -
Vian1g00187 558 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00187 558 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Vian1g00187 558 FunFam Mitogen-activated protein kinase 15 118 - -
Vian1g00187 558 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00187 558 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00187 Vian-Chr1 1637494 1642435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00187 1 558 MAP Kinase Gene Family AT5G19010 78.207 0.0 894
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vian1g00187 Pkinase 9.2e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00187 1 1637494 1642435 Vian6g01478 6 32395171 32401683 PCT