Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00174 ATGGCACAACAGGTATTACTGAACTCGTGTCCACATCAATATGTATCGCTTCGGCGGGTCAGAATTTCGAAGCCATCGATATGGGTCACGAAACCGACTACCGTTTCTTCACCATCATTTTCTACCTCAGCTCCTCTTCGCAACGCATCGTTCTGCTGCAGCTCTAGCGCTACCTCTTCTGTCGAACCCGATTTATCCTCTTCTGCCAAAATCTTCGTCAAAGGGCTACCTCACTCAACCTCTGAAGGAAGATTGATGAAGGTGTTTTCAGAGTTTGGTGTAGTTAATCTCGTCCAGCTTCCTATAGATGAAAAATCAGGAAAGTCTTTAGGATTTGCATTTATTTGGTTTGTAAAGGAAGAGTCTGCGCAATTGGCTGTCCAAGAGATGAATGGAAAGTTTTTTGATGGTAGATTTATTTATGTTACTATTGCAAAGCCTGGATCATTAAAAAATTCGAAGAGCACGACAGCCTACAAATTTTAA 486 0.4198 MAQQVLLNSCPHQYVSLRRVRISKPSIWVTKPTTVSSPSFSTSAPLRNASFCCSSSATSSVEPDLSSSAKIFVKGLPHSTSEGRLMKVFSEFGVVNLVQLPIDEKSGKSLGFAFIWFVKEESAQLAVQEMNGKFFDGRFIYVTIAKPGSLKNSKSTTAYKF 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00174 161 SMART rrm1_1 70 143 IPR000504 GO:0003723
Vian1g00174 161 Gene3D - 43 158 IPR012677 -
Vian1g00174 161 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Vian1g00174 161 SUPERFAMILY RNA-binding domain, RBD 61 149 IPR035979 GO:0003676
Vian1g00174 161 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
Vian1g00174 161 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 58 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00174 Vian-Chr1 1544349 1546592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00174 10 147 Eukaryotic Initiation Factors Gene Family AT3G11400 29.655 1.13e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00174 - - gmx:100791917 176.792
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00174 1 1544349 1546592 Vian1g00174 1 1544349 1546592 ECH