Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00173 ATGAACATGGTATCGGTTTCAGCGGTGTGCAAGGCGGTGGCGAGTATCAACCCGGGACTGACGATGTCTCCGCTGTCGCTGTTCAGGCAGCGCAACAAGGAAAAGGTTGTGGTCATAATGGGAGCGACGGGGACAGGAAAGTCAAAGCTTGGCATAGACCTTGCCACTCACTTCCCACCAGCGGAGATAGTCAACTCCGACAAAATGCAAGTGTACGAAGGTCTCGACATCACCACCAACAAAGTCACAGAAGACGAGTGCCGAGGGGTCCCACACCATCTCCTAGGCACTGTCCAACCCAACATTGATTTCACTGCCGACGACTTTTGCCACCACGCCACCCTCGCCGTCGGCTCCATTTTGAAACGCGACGGCTTGCCCATCATTGCCGGTGGCTCTAACTCTTTCCTCGACGCCTTGGTCAACCACTACCCTGACTTTCGCTTGCGCTACCACTGTTTGTTCCTCTGGGTCGACGTCTCCCTCCCTGTCCTCCACTCCTCTCTCTCCGCACGTGTTGATCGCATGATCCGCGCCGGGCAGGTCGACGAGGTTAGACCATTTTTCCAATACCACAACCGCGACTACACCCTGGGCATTCGAAAGGCCATTGGCGTCCCCGAGTTTCATTCCTTTTTCCAGGCCGAAGCCGACGGAGCCGACGAGAGGACCAAGGAGAAGCTCCTCCAGGCTGCCATTGCCTCCATCAAAATCAACAACTGCAACCTCGCCACCCGACAGCTCCACAAGATCCACCGCCTCCACGCCATTTTCAAACGGAACATGCACCGCCTCGACGCCACCGAAGTTTTCCTCAGGAGCACTCCCCAAGAAGCAGAGCAAGCGTGGGAGGATCACGTTCTGTCCAAAAGTCGAAGGATTCTTCACAACTTCCTCTACGACGACGCGCATGTTGATGTTGCTCTTGCTTCTGTTATCGCTTCTTCTTCGCCGCCCATGGCCGCAGCCGCCGCAACTCGCTAG 984 0.562 MNMVSVSAVCKAVASINPGLTMSPLSLFRQRNKEKVVVIMGATGTGKSKLGIDLATHFPPAEIVNSDKMQVYEGLDITTNKVTEDECRGVPHHLLGTVQPNIDFTADDFCHHATLAVGSILKRDGLPIIAGGSNSFLDALVNHYPDFRLRYHCLFLWVDVSLPVLHSSLSARVDRMIRAGQVDEVRPFFQYHNRDYTLGIRKAIGVPEFHSFFQAEADGADERTKEKLLQAAIASIKINNCNLATRQLHKIHRLHAIFKRNMHRLDATEVFLRSTPQEAEQAWEDHVLSKSRRILHNFLYDDAHVDVALASVIASSSPPMAAAAATR 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00173 327 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 33 298 IPR039657 -
Vian1g00173 327 Pfam IPP transferase 70 146 - -
Vian1g00173 327 Pfam IPP transferase 150 249 - -
Vian1g00173 327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 190 IPR027417 -
Vian1g00173 327 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 262 - -
Vian1g00173 327 Gene3D - 33 299 IPR027417 -
Vian1g00173 327 FunFam Adenylate isopentenyltransferase 5, chloroplastic 162 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00173 Vian-Chr1 1534884 1535867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00173 150 299 C2H2 Transcription Factor Family AT2G27760 29.545 1.54e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00173 K10760 - gmx:100782474 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00173 1 1534884 1535867 Vian6g01467 6 32295702 32296688 PCT