Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00164 ATGAGCACCTCAGCGGCTATAGAACAATTTGACAAATGCATGAATGGGCAAATAGAAGTTATCGCACGGGTTTGGCATTTATTTCAAGCCTACAAAAAGGACAAAAGTCCTTTCAAAATAGATGAGGGTCTGTATTTGGGTTCGATTGGCACTGCAGTTAACAAAGCTTCTTTGAAAGACCATAATATTACTCACATTTTGACTGTGGCTGGTAGAATACCACCTGCACATCCTGATGATTTTGTCTATAAAATTATACATGTTGTTGACAAAGACGATGAAGACTTAAGACAATACTTCAATGAGTGTTTTGATTTTATTGATGAAGCCAAAAGACTCGGTGGAGGTGTTTTGGTTCACTGTTTCGCTGGAAGATCAAGGAGTGTGACTATAGTTGTTGCATATCTGATGAGGACTCGTGGAATGAGCCTTTCTGAAGCTCTGCAACATGTAAGGAGTATACGACCAGAAGCACGTCCCAATCAGGGTTTTATTTGTCAGCTGGAGGACTTCGAAAAGTCTCTTCAAGGTGCCTCTAAGTCACTTTAG 549 0.4026 MSTSAAIEQFDKCMNGQIEVIARVWHLFQAYKKDKSPFKIDEGLYLGSIGTAVNKASLKDHNITHILTVAGRIPPAHPDDFVYKIIHVVDKDDEDLRQYFNECFDFIDEAKRLGGGVLVHCFAGRSRSVTIVVAYLMRTRGMSLSEALQHVRSIRPEARPNQGFICQLEDFEKSLQGASKSL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00164 182 SMART dsp_5 36 174 IPR020422 GO:0006470|GO:0008138
Vian1g00164 182 Gene3D Protein tyrosine phosphatase superfamily 29 181 IPR029021 -
Vian1g00164 182 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 35 179 IPR029021 -
Vian1g00164 182 FunFam Dual specificity phosphatase 12 38 181 - -
Vian1g00164 182 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 98 156 IPR000387 GO:0016311|GO:0016791
Vian1g00164 182 ProSiteProfiles Dual specificity protein phosphatase domain profile. 36 177 IPR020422 GO:0006470|GO:0008138
Vian1g00164 182 CDD DSP 37 170 - -
Vian1g00164 182 Pfam Dual specificity phosphatase, catalytic domain 44 173 IPR000340 GO:0008138|GO:0016311
Vian1g00164 182 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 36 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00164 Vian-Chr1 1445980 1448324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00164 39 177 Protein tyrosine phosphatase (PTP) family AT3G06110 60.432 1.09e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00164 - - gmx:100306342 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00164 1 1445980 1448324 Vian1g00164 1 1445980 1448324 ECH