Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00149 ATGTCAGAAATGCGGGTGTCCGAGCTTCACTTGAAAAAGGAACTCACCCAAATACGCAAGGCTGCTCGAGTTCTCAGAGATCCTGGCACCACATCTTCGTGGAAGTCACCGCTCAGTTCATCAAGATCCGTGGCTGCATGGAACAGAGACAGTGGAAGTAGAAGGCTCAGCACCAACTCTCAACTTGCCAACAATGACAAAGAGAAAGAGAAGGAGAGGGAGAAAAAGGTGTTCTTGTACAATTGGAAGAACTACAAATCTTCGAGTGAGAAATACAACGAGGAAGAAGATGACGATGATGGTGATGATGGGGGGTCTTCGTCGCTTCTTGGGGACAGAGACAGAGACAGTTTGAGTGATGCTCGCAATGGTTGCGACTCTAAGAGTGATACATACCTGGCTGCTGGTGGTACCGGTGGCGGTGGTGGGACTCGTTCTTCTATTTTCAGATGTGGGGATGCTAATCTTGTTTCGAGAAGAACTGTCCCCGTTAAGAAAAAGAGTAAGCAAAATAACCCTCATTTTGATTTTTTAGCAAAATATCAACAGCATAGACAAACGAATCCAGGGAGAAATTTTGTGAGTTCTTCGAAGGCAATGCTCGAGGGCCATTCTTCTTTGCCATTTTTTAGCAGAGATGACTCTGTTGAGTTCTCTGATGATACCGAGGATTACACTAATTCTGAGGGCGTGAGACCGATTTCGGGGACTTCCCCTTTGCTTCTCAAACTCAGGCAAAAGAACTGGTCTCGCTCTTCCTCGAAGTTTTTGAGAAGAAGTCGAAAAGAGGACTCTTCTTATTCTTATAGCACCCCTGCATTGTCAACTAGTTCTTACAATCGGTACGGTCACCGTTATCCCAGCACCCTTGGATCCTGGGATGGCACCACCACTTCCGTGAATGATGGCGATGGAGATGATGAGATTGATGATCATTTGGATTTGCCTGGCCGCCAAGGATGTGGAATTCCTTGCTATTGGTCCAAGAGGACTCCTAAACATAAAGGGATGTGTGGGAGTTGCTATTCTCCCTCACTGTCCGACACTTTAAGGAGGAAAGGGAGTAGCATGCTCTGTGGAAGTCAAAATATTTATCCCAGACACCGCAGATCGGTTTCGGCATCTCAAAAGAGAAGACTTTCTCAGAGGAGTGCTCGAGGTGTCATTCCATTACTCACAAACAGTGGTGATGCCAGAGAAGGGTCGTCTGTGGGAACCGGAAGGAGTGATGATGAACTTTCCACGAACTTTGGGGAGCTTGATCTTGAGGGATTGAGCCGCTTGGATGGAAGAAGGTGGTCATCTAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTAGCTCTCAATGGGGAAGGGGAAGAGGAGGGCACGCCGGAGAATAGTCGCTGTTTCAGCCAAAAGTATAGGCCGATGTTCTTTGGCGAACTGATTGGGCAGAATATTGTTGTTCAGTCACTTATCAATGCTGTTTCCAGGGGACGCATTGCTCCTGTCTATCTGTTTCAAGGTCCCCGTGGAACTGGCAAAACGTCAACCGCTAAGATATTTGCTGCTGCCTTGAACTGTGCAAGTCCTGATGAGAATAAACCTTGTGGCTACTGCAGGGAATGCACTAATCTCATTTCTGGTAAGAGCAGTGATCTTTTGGAAGTTGATGGAACCAATAAGAGAGGAATTGATAAGGCTAGATATCTCCTGAAAAGATTGTCAACTGAGTCATCGTCAGCCTCACCACAATATACAGTTTTGGTTATTGATGAGTGTCACTTGTTGCCCTCAAAGACGTGGCTGGGATTTCTCAAGTTCCTGGAAGAACCACCCCAGCGAGTTGTATTCATATTTATAACATCTGATCTTGACAATGTACCACGGACAATACAATCTCGTTGCCAAAAGTACCTTTTTAATAAAATTAAAGATGTGGATATGGTGACCAGGTTGAGGAAAATATCTACTCAGGAGAACCTTGATGTTGAAGCAGATGCACTGGACCTCATTGCTACGAATGCAGATGGATCGCTTCGAGATGCAGAAACAATGTTAGAACAGCTTAGTTTGCTGGGGAAGAGAATTACTACTTCTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAAAAATTGTTGGAACTTTTGGAGTTGGCAATGTCGTCAGATACTGTAGAGACAGTGAAAAGAGCTAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTTGCTGGCCTTATCATGGACATCATTGCTGGGTCATATGCAGTCGTTGACACAAGACCTGATGATTCATTCTTTGGTGGACGGAGTTTGAATGAATCAGAGTTGGAGAGGTTAAAAAATGCTTTGAAGCTTCTCTCTGAGGCCGAGAAACAGTTAAGAACATCCAGTGAACGGTGTACATGGTTCACAGCAACTCTTTTGCAGCTTGGTTCTACACCTTCTCCTGATCTCACGCAGTCAAGCAGCAGTAGAAGGCAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGTTTCACGAGATGTTACCTCTGGCACGCACAAGTCAGACCCTCAGTATGTGCCTCGAAAGTCACCTTTCTCTGGATCCCAGCAAAAGGCAGTAGATGATGATTCCAAACATCAAAAGGAATCAAAGATTGAAGGTTTCAGCTTGAAATCGAAGCCCTCAAACAGCCCAGTATTAGATGATGGCTCTACAGTTGTATCATCTGATGATCTTATGGTGGGGAATACAATGTATAGGTGCATAGATTCAGGGAAGTTATCTGACATCTGGGTGCATTGTATTGAGAAGTGCCACTCTAAGACATTGAGGCAGCTGCTGCACCATCATGGAAAGCTTGTGTCCATATGTGAAGTAGAAGATGTTTTGGTAGCATATATTGCTTTTGGTGACGCGGATATTAAAGTTCGGGCTGAGAGGTTTTTAAGAAGCATCACAAACTCCATGGAAATGGTTCTTAGGCGCAATGTGGAGGTCCGAATAATCCACTTGGCAGGTGGAGAAGGTGAAAACAAGGTTAATCTAACAGGTGTAAAGCAGGGTGAGTCAATAGTGGCTAGTGAGAAGGAACAAAGACAGGGTCATGTGAATGGAACGGAGTCTTATTCTACTTTGCCTCCTTTACTTGATAGAAACCTTCAATCTAGGACTGCTTCATCAGATATCTTGGGTGAAGGTAATGGTGGGAGGGAGAGGAGACAAGATAATCCGATGCATAGAATTGAATCCATCATTCGTGAGCAGAGGCTGGAAAGTGCCTGGTTACAGGCCGTAGAGAAAGGTTCCCCGGGATCATTAAATCGTTTGAGACCCGAAAAGAATCAAGTACTGCCACAGAATGGTGTAGACCCGATGGAGTCCATGGAGTCAACAAGATTTTCCTCTCACCAGCATTGGGAAGACGAACCCAATAATGAACTCAAAGTTTTGACCCTTAAAAATGGAAGGGTCCCTCAGAAGGACCAGACTGGTAGAAAGGCAGATCGTTATCCCATGTCCCCAAGTTTATTGCATGACACCAGCTTAGCCACAATTTCTGGAAAAGACCATCCGGGATATGAATCGGGGTCAGGAGCTGGTGGTTGTGGGTTTTTATGTTGGAATAAGTCGAAGCCGAGAAGGGTAATGAAGGTGAAAGGTGGCACCCCAGTTAGAGCGCGCAGAGGGGCAAGTTTTGCGTTGTTCGGTGACTGTGGTAAGACAAAGAAAAGGGAGCGGAAAAGATAA 3741 0.4526 MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNRDSGSRRLSTNSQLANNDKEKEKEREKKVFLYNWKNYKSSSEKYNEEEDDDDGDDGGSSSLLGDRDRDSLSDARNGCDSKSDTYLAAGGTGGGGGTRSSIFRCGDANLVSRRTVPVKKKSKQNNPHFDFLAKYQQHRQTNPGRNFVSSSKAMLEGHSSLPFFSRDDSVEFSDDTEDYTNSEGVRPISGTSPLLLKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRYGHRYPSTLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHKGMCGSCYSPSLSDTLRRKGSSMLCGSQNIYPRHRRSVSASQKRRLSQRSARGVIPLLTNSGDAREGSSVGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEEEGTPENSRCFSQKYRPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTAKIFAAALNCASPDENKPCGYCRECTNLISGKSSDLLEVDGTNKRGIDKARYLLKRLSTESSSASPQYTVLVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDVDMVTRLRKISTQENLDVEADALDLIATNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVVDTRPDDSFFGGRSLNESELERLKNALKLLSEAEKQLRTSSERCTWFTATLLQLGSTPSPDLTQSSSSRRQSCKTTEDDPSSVSRDVTSGTHKSDPQYVPRKSPFSGSQQKAVDDDSKHQKESKIEGFSLKSKPSNSPVLDDGSTVVSSDDLMVGNTMYRCIDSGKLSDIWVHCIEKCHSKTLRQLLHHHGKLVSICEVEDVLVAYIAFGDADIKVRAERFLRSITNSMEMVLRRNVEVRIIHLAGGEGENKVNLTGVKQGESIVASEKEQRQGHVNGTESYSTLPPLLDRNLQSRTASSDILGEGNGGRERRQDNPMHRIESIIREQRLESAWLQAVEKGSPGSLNRLRPEKNQVLPQNGVDPMESMESTRFSSHQHWEDEPNNELKVLTLKNGRVPQKDQTGRKADRYPMSPSLLHDTSLATISGKDHPGYESGSGAGGCGFLCWNKSKPRRVMKVKGGTPVRARRGASFALFGDCGKTKKRERKR 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00149 1246 NCBIfam DNA polymerase III subunit gamma/tau 463 812 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vian1g00149 1246 MobiDBLite consensus disorder prediction 25 73 - -
Vian1g00149 1246 MobiDBLite consensus disorder prediction 106 123 - -
Vian1g00149 1246 MobiDBLite consensus disorder prediction 88 148 - -
Vian1g00149 1246 MobiDBLite consensus disorder prediction 396 413 - -
Vian1g00149 1246 MobiDBLite consensus disorder prediction 870 886 - -
Vian1g00149 1246 FunFam DNA polymerase III subunit gamma/tau 639 701 - -
Vian1g00149 1246 MobiDBLite consensus disorder prediction 1026 1075 - -
Vian1g00149 1246 MobiDBLite consensus disorder prediction 887 902 - -
Vian1g00149 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 685 IPR027417 -
Vian1g00149 1246 Coils Coil 771 801 - -
Vian1g00149 1246 Pfam DNA polymerase III, delta subunit 478 638 - -
Vian1g00149 1246 MobiDBLite consensus disorder prediction 815 829 - -
Vian1g00149 1246 MobiDBLite consensus disorder prediction 29 63 - -
Vian1g00149 1246 Pfam DNA polymerase III subunits gamma and tau domain III 692 811 IPR022754 GO:0003887
Vian1g00149 1246 Gene3D - 641 701 - -
Vian1g00149 1246 MobiDBLite consensus disorder prediction 815 902 - -
Vian1g00149 1246 FunFam DNA polymerase III subunit gamma/tau 459 637 - -
Vian1g00149 1246 SMART AAA_5 495 639 IPR003593 GO:0016887
Vian1g00149 1246 SUPERFAMILY post-AAA+ oligomerization domain-like 709 810 IPR008921 GO:0003677|GO:0006260
Vian1g00149 1246 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 466 862 - -
Vian1g00149 1246 CDD HLD_clamp_pol_III_gamma_tau 638 701 IPR045085 -
Vian1g00149 1246 Gene3D - 455 636 IPR027417 -
Vian1g00149 1246 MobiDBLite consensus disorder prediction 840 869 - -
Vian1g00149 1246 MobiDBLite consensus disorder prediction 369 415 - -
Vian1g00149 1246 CDD AAA 477 635 - -
Vian1g00149 1246 MobiDBLite consensus disorder prediction 1034 1060 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00149 Vian-Chr1 1347212 1353393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00149 459 753 Core DNA Replication Machinery Family AT1G21690 24.671 1.00e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00149 - - gmx:100814391 2083.15