Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00145 ATGGCAATTGCAGCCGCAAACTCATCGCCCACCATGAGTCTCAGCCAGAGCCAGAGCCAGGAGGACGTCACCACCACCTCAACCACCAACGACAACACCAACAGTAACAACAACAACAACGATAACAAGCCCGACGATCACGAGCATGACATGGTTATGCCTGGTTTTCGCTTCCATCCAACTGAAGAAGAGCTCGTCGAATTCTACCTTCGCCGTAAGGTGGAGGGAAAGCGTTTCAACGTTGAACTCATTACTTTCCTCGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCGTTGGCGGCTATTGGCGAGAAGGAGTGGTACTTCTATGTGCCGAGAGATAGAAAGTATCGAAACGGTGATCGTCCCAATCGTGTCACCACCTCTGGGTATTGGAAGGCGACGGGAGCTGATAGGATGATCCGAACGGAGAATTTTCGGTCAATCGGCCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCCAAAGGCATACGAACTAGTTGGATTATGAACGAGTATCGCTTGCCGCAACACGAAACCGAACGATATCAAAAGGAAAACCCGCCGGTTCTTAGTTTTGAGATTCTTCCTTCCGAAACCATAGCTAGATTCGGAGCTATGGCACACCAAAATGCTATAGTTGCGCGAAACTTGCAGCCACTCATGGCTGAGATATCGCTTTGCCGCGTGTACAAGAGAGCTGGAGTAGAGGATCATCCCTCCCTCCCTCGCTGTCTCCCAACAAGGCCATCTTCATCAAGAGCTTCTTCGCACTCCGAAACCAAGAAGCACAACGAGTTGGTTCATCACAACATGGGATTTGTGGGACAATCGAAGCCAACCGAACACATAGTTGACAAAATGAATGAAACGGAAGCAAGCAGTGATGTCAACACGGCTCTTGGACTTTCGAAATACAATGCTTACCGTGCTGCGATGGGTGCACTCAGCAGCACAATGGCACTTCCGGTTGTTCCGATGGACGAGGAAGGGCTGATGATGATGCAGCATCAGCAGCAGTCTAAGCAAGCGGCAGCACACGCAGGTGCTCCTGGGATTGGCACAATCTTCTCTGCTGGACCTTCTAGTTCCAATAACAATGGAGTGGTGAACATGGATGATCTGAATAGGCTAGTGAGTTACCAGCAGCAGTACTACAATGTTCAAAGCCATCCCAATCAGTTCTCTACTCTGCTGATGCAACCATCACCGGTAGTGTCTCTCAGCTCGCTACCAAATCCACTTCCAACCACCTTCTCTGACCGACTGTGGGAGTGGAATCCAATCCCAGAGCCACCAAATCAAGAGTACAGCAACATGTCCTTCAAGTAA 1341 0.4959 MAIAAANSSPTMSLSQSQSQEDVTTTSTTNDNTNSNNNNNDNKPDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKENPPVLSFEILPSETIARFGAMAHQNAIVARNLQPLMAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSRASSHSETKKHNELVHHNMGFVGQSKPTEHIVDKMNETEASSDVNTALGLSKYNAYRAAMGALSSTMALPVVPMDEEGLMMMQHQQQSKQAAAHAGAPGIGTIFSAGPSSSNNNGVVNMDDLNRLVSYQQQYYNVQSHPNQFSTLLMQPSPVVSLSSLPNPLPTTFSDRLWEWNPIPEPPNQEYSNMSFK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00145 446 ProSiteProfiles NAC domain profile. 52 236 IPR003441 GO:0003677|GO:0006355
Vian1g00145 446 MobiDBLite consensus disorder prediction 1 53 - -
Vian1g00145 446 Gene3D NAC domain 61 238 IPR036093 GO:0003677|GO:0006355
Vian1g00145 446 SUPERFAMILY NAC domain 52 186 IPR036093 GO:0003677|GO:0006355
Vian1g00145 446 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 49 320 - -
Vian1g00145 446 MobiDBLite consensus disorder prediction 245 265 - -
Vian1g00145 446 Pfam No apical meristem (NAM) protein 54 178 IPR003441 GO:0003677|GO:0006355
Vian1g00145 446 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00145 Vian-Chr1 1319254 1321491 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00145 51 262 NAC Transcription Factor Family AT2G02450 72.642 2.46e-106 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian1g00145 NAM 5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00145 - - vum:124824712 666.766