Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00142 ATGTGGGAAAGAATATCAGTAGTTCTGCTGCTTGTTTTGAATTATGTGTTGGTTGCAAAAGGAGAAACAGATGATGTGGATTTTTCCACACTTAAGTCTCTTACGAGTACCTGGACGAACACCCCTCCAGAGTGGGAGGGTACAGATCCTTGTGAACATTGGGAAGGAATCAAGTGCAAGAATACACGTGTTACATCAATAACACTGGCAAGTACTAGTTTGGGTGGTCAGCTTTCTGGAGATATTGGATCACTGTCTGAATTGGAGATTTTGGATCTATCTTACAACAAGGACTTGACTGGACCACTTCCACAATCCATCGGGGATTTGAGGAAGCTGTCAACCTTAATTCTTGTTAGCTGCAGCTTCAGTGGTCCTATTCCAGACAGCATAGGAAATATGCAGGAGCTCCTGTTCTTGTCTTTAAATTCCAATGGCTTTAGTGGAGTAATTCCGGCTTCTATTGGTAATCTATCAAAGCTTTATTGGTTAGATTTAGCAGACAATCAACTTGAAGGGAGCATCCCGGTATCTGGTGATGACACATTTGGTCTTGATAATTTACATCATGCCAAACATTTTCATCTTGGGAAGAATAATCTCTCAGGCACCATCCCTCCTCGACTGTTTAGCCCAGAAATGGCTCTCATTCATTTGCTTTTGGAAAGCAATAAACTCGTAGGGAAAATTCCATATACACTAGGACTGGTTAAGAGTCTGGAGGTGGTGCGCTTAGATGGTAATTCATTGGAAGGACCTGTACCTTCAAACATCAACAATCTTACGAATGCTCGAGATCTGTACTTGTCCAACAATAAACTGTCAGGCTCCCCGCCAGACCTTACTGGAATGAATGCCCTCAGCTACCTGGACATGAGCAACAATAGTTTTACACCATTGGATTTTCCAGAATGGTTCTCTACTCTCAAGTCCTTAACGACATTAATGATGGAGCGAACACAACTTCAAGGACAGGTTCCCTCTTCTTTGTTTGAACTTGTCAATTTACAGACTGTGGTCCTAAAAGACAACAAAATAAATGGAACCTTGGATGTCGTCTCCTCCTACAGCAGCCGGCTGCGACTTATTGATTTGGAGACTAATTCAATTGACAGCATTAAGCAAACTGAAGTTTCAAAAGTCATTATAATACTCAAAGATAACCCAGTTTGCCAAGAAACTAATGAACGAGGGGCATATTGCTCCTCTTCTCAATCCAATTTCTCGTATTCAACACCACCAAATAACTGTGAACCTGGTGCCTGCAGTTCAGATCAGATTTCGAGTCCCAGCTGTAAATGCGCATATCCATATACAGGAACCTTAGCTTTCAGGTCACCTTCCTTTACGGACTTGGATAACACAACACACTACTCAATGCTTGAGGATTCTCTGATGCGGTCTTTTAAGTCTCACTTTGTACCTGTGGATTCGGTTTTGTTGAGCCTTCCAAGAAGGGATTCAACTGGGTATCTCAAATTGAGCTTACAAGTCTTCCCATCCGGACTAGATCATTTCAATCGAACAGGGACTTTAACAATTGGTTTTATGCTAAGCAACCAGACTTTTAAGCCTCCACAACCGGATTTTGGACCATATTTTTTTCTTGCAGATGGATATGAACACTTTGGGAACTATGAAGGATTGAGTGAATCGGGTAAACATTCAAACATTGGAATCATAATTGGGGCAGCAGTCGGTGGTTTGGTCTTGCTAGTGTTATTACTCTTAGCTGGTCTTTATGCTTTCCGCCAGAAGAAAAGGGCCGAAAAAGCGATTGGACAAAGCAATCCTTTTAGACGCTGGGATACGGTTGATAGCAAGAGTGATGTCCCTCAGTTGAAAGAAGCAAGAATGTTTACTTTTGAAGACCTTAAAAAATACACCAAAAATTTTTCTCAAGTCAATGACATTGGATCTGGGGGTTTTGGGAAGGTTTATAAGGGAACCCTTCCCAATGGACAAAGGGTAGCAATAAAAAGAGCTCAAAAAGAATCTATGCAGGGAAAGCTCGAGTTTAAAGCGGAGATTGAACTTCTATCAAGGGTTCACCACAAGAATCTTGTCAGCCTTTTGGGCTTCTGCTTTGACCAAGGAGAGCAAATGCTGGTTTATGAGTATCTTCAAAATGGAAGTTTAAAGGACGCTCTCACAGGGAAGTCAGGAATTAAGTTAGATTGGATTAGAAGGCTAAAACTTGCTCTTGGTATTGCCAGGGGTCTGGCTTATCTTCATGAACTTGTTAATCCTCCCATCATACATAGGGACATAAAATCAAACAATATTTTGCTGGATAACCGCTTAAATGCCAAAGTTTCTGATTTTGGTCTCTCCAAGTCTATGGTAGATGCAGAAAAGGATCATGTTACCACCCAAGTTAAAGGAACACTGGGTTACTTGGATCCAGAGTATTATATGTCTCAACAATTGACTGAGAAGAGTGACGTGTATAGCTTTGGAGTGCTAATGTTGGAGCTGATATCTGCAAGAAAGCCATTGGAGCGAGGGAAGTATATTGTGAAAGAGGTTAAGAATGCACTGGATAAGACAAAAGGCTTATACGGTCTTCAAGAATTTATTGATCCAGCCATGGGATTGTCGTCCACAACACTGATCGGTTTTGACAAGTTTGTGAATTTGACCTTGAAATGTGTTGAAGAGTCAGGTGAAGCAAGGCCTAAAATGAGTGATGTGGTAAGAGAAATTGAGAACATATTGAAGTTAACTGGTGCAAACCCTACTGAGGAATCACCCTCCATCTCTTCTAGCTATGAAGAGGTGAGCAGAGGGAGTTCCAGCCATCCTTATAATAGCAACGACACCTTTGATTTGAGTGGAGAGTCTCCATATCCAAAAGTTGACGCTAGCTAA 2871 0.4145 MWERISVVLLLVLNYVLVAKGETDDVDFSTLKSLTSTWTNTPPEWEGTDPCEHWEGIKCKNTRVTSITLASTSLGGQLSGDIGSLSELEILDLSYNKDLTGPLPQSIGDLRKLSTLILVSCSFSGPIPDSIGNMQELLFLSLNSNGFSGVIPASIGNLSKLYWLDLADNQLEGSIPVSGDDTFGLDNLHHAKHFHLGKNNLSGTIPPRLFSPEMALIHLLLESNKLVGKIPYTLGLVKSLEVVRLDGNSLEGPVPSNINNLTNARDLYLSNNKLSGSPPDLTGMNALSYLDMSNNSFTPLDFPEWFSTLKSLTTLMMERTQLQGQVPSSLFELVNLQTVVLKDNKINGTLDVVSSYSSRLRLIDLETNSIDSIKQTEVSKVIIILKDNPVCQETNERGAYCSSSQSNFSYSTPPNNCEPGACSSDQISSPSCKCAYPYTGTLAFRSPSFTDLDNTTHYSMLEDSLMRSFKSHFVPVDSVLLSLPRRDSTGYLKLSLQVFPSGLDHFNRTGTLTIGFMLSNQTFKPPQPDFGPYFFLADGYEHFGNYEGLSESGKHSNIGIIIGAAVGGLVLLVLLLLAGLYAFRQKKRAEKAIGQSNPFRRWDTVDSKSDVPQLKEARMFTFEDLKKYTKNFSQVNDIGSGGFGKVYKGTLPNGQRVAIKRAQKESMQGKLEFKAEIELLSRVHHKNLVSLLGFCFDQGEQMLVYEYLQNGSLKDALTGKSGIKLDWIRRLKLALGIARGLAYLHELVNPPIIHRDIKSNNILLDNRLNAKVSDFGLSKSMVDAEKDHVTTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGVLMLELISARKPLERGKYIVKEVKNALDKTKGLYGLQEFIDPAMGLSSTTLIGFDKFVNLTLKCVEESGEARPKMSDVVREIENILKLTGANPTEESPSISSSYEEVSRGSSSHPYNSNDTFDLSGESPYPKVDAS 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00142 956 FunFam Leucine-rich repeat family protein 26 180 - -
Vian1g00142 956 ProSitePatterns Protein kinases ATP-binding region signature. 638 660 IPR017441 GO:0005524
Vian1g00142 956 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 708 918 - -
Vian1g00142 956 MobiDBLite consensus disorder prediction 910 945 - -
Vian1g00142 956 SUPERFAMILY Protein kinase-like (PK-like) 618 940 IPR011009 -
Vian1g00142 956 FunFam Leucine-rich repeat protein kinase family protein 181 280 - -
Vian1g00142 956 Pfam Leucine rich repeat 239 296 IPR001611 GO:0005515
Vian1g00142 956 ProSiteProfiles Protein kinase domain profile. 632 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00142 956 Gene3D Phosphorylase Kinase; domain 1 603 707 - -
Vian1g00142 956 SMART serkin_6 632 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g00142 956 SUPERFAMILY L domain-like 58 375 - -
Vian1g00142 956 ProSitePatterns Serine/Threonine protein kinases active-site signature. 752 764 IPR008271 GO:0004672|GO:0006468
Vian1g00142 956 MobiDBLite consensus disorder prediction 909 956 - -
Vian1g00142 956 Gene3D Ribonuclease Inhibitor 280 415 IPR032675 -
Vian1g00142 956 FunFam Leucine-rich repeat protein kinase family protein 598 707 - -
Vian1g00142 956 Gene3D Transferase(Phosphotransferase) domain 1 708 926 - -
Vian1g00142 956 Gene3D Ribonuclease Inhibitor 181 279 IPR032675 -
Vian1g00142 956 Gene3D Ribonuclease Inhibitor 26 180 IPR032675 -
Vian1g00142 956 Pfam Protein tyrosine and serine/threonine kinase 635 901 IPR001245 GO:0004672|GO:0006468
Vian1g00142 956 CDD STKc_IRAK 638 905 - -
Vian1g00142 956 PANTHER RECEPTOR-LIKE PROTEIN 55 32 905 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00142 Vian-Chr1 1274107 1279977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00142 1 954 Receptor kinase-like Gene Family AT5G49760 56.400 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vian1g00142 PK_Tyr_Ser-Thr 3.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00142 - - gmx:100811702 1498.41