Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00131 ATGGCAGAAGTTGAGGTTGATGTGGCGGCAGGAGCACAGCCGAAGAAGAGAACATTCAAGAAGTTCAGCTTCAGAGGCGTAGATCTGGACGCGCTTCTTGATATGTCCACTGATGAACTCGTCAAGCTCTTCAGTGCCCGTGCTCGTAGAAGGTTTCAGAGAGGGCTTACCAGAAAGCCCATGGCCTTGATTAAGAAGCTCCGCAAAGCGAAAAGGGAAGCACCGGCAGGTGAGAAGCCAGAGCCAGTGCGTACTCATCTGCGCAACATGATTATTGTCCCTGAGATGATCGGTAGTATCATTGGAGTGTACAATGGCAAGACCTTCAATCAGGTTGAAATCAAACCCGAAATGATTGGCCACTATCTCGCTGAGTTTTCAATTTCATACAAACCTGTCAAGCACGGTAGACCTGGTATTGGTGCCACCCACTCTTCTAGGTTCATTCCTCTCAAGTGA 459 0.488 MAEVEVDVAAGAQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00131 152 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 8 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vian1g00131 152 SUPERFAMILY Ribosomal protein S19 55 136 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vian1g00131 152 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 9 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vian1g00131 152 PRINTS Ribosomal protein S19 family signature 105 117 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vian1g00131 152 PRINTS Ribosomal protein S19 family signature 117 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vian1g00131 152 PRINTS Ribosomal protein S19 family signature 85 104 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vian1g00131 152 Pfam Ribosomal protein S19 50 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vian1g00131 152 Gene3D 30s Ribosomal Protein S19; Chain A 8 152 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vian1g00131 152 NCBIfam 30S ribosomal protein S19 19 152 IPR005713 GO:0003735|GO:0006412|GO:0015935
Vian1g00131 152 ProSitePatterns Ribosomal protein S19 signature. 105 129 IPR020934 GO:0003723
Vian1g00131 152 Hamap 30S ribosomal protein S19 [rpsS]. 48 141 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vian1g00131 152 FunFam 40S ribosomal protein S15 9 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00131 Vian-Chr1 1179266 1179970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00131 7 152 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 89.041 7.36e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00131 K02958 - gmx:100801408 291.197