Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00120 ATGGATGAACAATTGAGGTTGCTAAAAGTCATTGTTGTGCAAGGGAAAAGATTAGTGATCCGGGATTTCAAGAGCAGTGACCCTTATGTTGTTGTCAAGCTGGGGAATCAGGAACATTGTAAATGTTTCATTATCATGAATCAGACAGCAAAGACCAGGGTCATCCATTGTTCCTTGAATCCTGTCTGGAATGAAGAGCTGAGTTTCACTCTGACTGAACCTTTCGGACTTCTGAATTTGGAAGTGTTTGACAAAGATTTTCTGAAGGCTGATGACAAGATGGGGAGTAGTTATCTGAATCTTCAACCATTGATGTCTGCATCTAGATTAAGAGATATTTTAAAGGTGTCATCTGCCTCTGGTGAGACAACATTGAGGAAGGTGACACCAGACAGTGAAAATTGTCTTGCCCGTGAAAGCAGTATCAGTTGTGTTAATGGTGAAGTGGTACAAAATGTTTGGTTAAGGCTTCGTGGGGTTGAATCTGGGGAGCTACAATTGACTATCAAGTTGATCTCTTCCTCAAATTAA 531 0.4068 MDEQLRLLKVIVVQGKRLVIRDFKSSDPYVVVKLGNQEHCKCFIIMNQTAKTRVIHCSLNPVWNEELSFTLTEPFGLLNLEVFDKDFLKADDKMGSSYLNLQPLMSASRLRDILKVSSASGETTLRKVTPDSENCLARESSISCVNGEVVQNVWLRLRGVESGELQLTIKLISSSN 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00120 176 SMART C2_3c 7 113 IPR000008 -
Vian1g00120 176 Pfam C2 domain 8 111 IPR000008 -
Vian1g00120 176 Gene3D C2 domain 1 176 IPR035892 -
Vian1g00120 176 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 173 IPR044562 -
Vian1g00120 176 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 173 IPR035892 -
Vian1g00120 176 ProSiteProfiles C2 domain profile. 1 114 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00120 Vian-Chr1 1101966 1102872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00120 1 172 C2H2 Transcription Factor Family AT4G21160 36.628 1.19e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00120 - - pvu:PHAVU_003G087500g 293.893