Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00118 ATGGAAAATGGAGGCTTTCATGGCTACCGCAAGCTCCCCAACACCACCAACTCTGCTGGGCTGAAGCTGTCAGTGCCAGACATGAACAACACGAACGTGAGGCAGGCATCTGGAGAGAACAACAACAACAACCACGCAGCAGATGAGACCAACAACGAATGCACCGTGAGGGAGCAAGACCGTTTTATGCCAATCGCGAATGTGATTAGGATCATGCGAAAGATTCTCCCCCCACATGCCAAGATCTCTGATGATGCCAAAGAAACAATTCAAGAGTGCGTGTCTGAGTACATCAGCTTTATCACCGGAGAGGCAAATGAGCGTTGCCAGAGGGAACAGCGCAAGACCATAACTGCTGAGGATGTGCTTTGGGCCATGAGCAAGCTTGGATTTGATGATTACATGGAACCACTGACCATGTACCTTCACAGGTATCGTGAGCTCGAGGGTGACCGAACCTCCATGAGAGGTGAATCACTGGGGAAGAGGACTATTGAATACGCCCCTATGGGTGTTGGCGTTCCCACTGCTTTTGTGCCTCCACCGTTTCACCCCAATGGATACTATGCTCCTGCCATGGGGACTTACGTTGCGCCACCAAACCCTGCGTCATCTCATCACCATGGAATGCCTAGCACTGAACCGAATTCTCGCTCCATGTGA 663 0.5128 MENGGFHGYRKLPNTTNSAGLKLSVPDMNNTNVRQASGENNNNNHAADETNNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYMEPLTMYLHRYRELEGDRTSMRGESLGKRTIEYAPMGVGVPTAFVPPPFHPNGYYAPAMGTYVAPPNPASSHHHGMPSTEPNSRSM 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00118 220 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 36 186 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vian1g00118 220 MobiDBLite consensus disorder prediction 200 220 - -
Vian1g00118 220 MobiDBLite consensus disorder prediction 1 53 - -
Vian1g00118 220 MobiDBLite consensus disorder prediction 10 50 - -
Vian1g00118 220 MobiDBLite consensus disorder prediction 206 220 - -
Vian1g00118 220 ProSitePatterns NF-YB/HAP3 subunit signature. 93 109 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vian1g00118 220 Gene3D Histone, subunit A 49 167 IPR009072 GO:0046982
Vian1g00118 220 FunFam Nuclear transcription factor Y subunit B-6 51 167 - -
Vian1g00118 220 PRINTS CCAAT-binding transcription factor subunit A signature 128 146 - -
Vian1g00118 220 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Vian1g00118 220 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Vian1g00118 220 SUPERFAMILY Histone-fold 59 157 IPR009072 GO:0046982
Vian1g00118 220 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 62 126 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00118 Vian-Chr1 1073541 1075627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00118 1 152 CCAAT-HAP3 Transcription Factor Family AT5G47670 72.956 1.08e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vian1g00118 CBFD_NFYB_HMF 6.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00118 K08065 - gmx:100194424 331.257