Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00116 ATGAGTTTTTGTTTGGTGGGTGAGTTCTTGCACAGTGATGGTATGATGGCTGAATCTGATAACGAGTCAGGAGGAGGAAAGAATGAATCTTCAATCTGCAGAGAGCAAGACAGGCTCCTTCCCATAGCCAACGTGGGCAGGATCATGAAGAAGGTGTTGCCGGGCAACGCTAAGATTTCCAAAGAATCAAAAGAAACCATGCAAGAGTGTGTGTCTGAGTTCATCAGTTTTGTAACAGGAGAGGCTTCTGATAAGTGTCAGAAAGAGAAAAGAAAGACCATCAACGGAGATGATCTTCTGTGGGCCATGGCCTCGCTTGGCTTTGAAGATTATGCAGAGCCCCTCAAAGCTTATCTGCACAAGTACAGGGAGATGGAAGGAGAAAAAACTGCTATGATTGGGAAGCACCATGGTGCTACTGGCTTTTATGCAAATCCACTGTGA 444 0.455 MSFCLVGEFLHSDGMMAESDNESGGGKNESSICREQDRLLPIANVGRIMKKVLPGNAKISKESKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMASLGFEDYAEPLKAYLHKYREMEGEKTAMIGKHHGATGFYANPL 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00116 147 Gene3D Histone, subunit A 26 141 IPR009072 GO:0046982
Vian1g00116 147 SUPERFAMILY Histone-fold 36 138 IPR009072 GO:0046982
Vian1g00116 147 ProSitePatterns NF-YB/HAP3 subunit signature. 70 86 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vian1g00116 147 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 21 130 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vian1g00116 147 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 39 103 IPR003958 -
Vian1g00116 147 FunFam Nuclear transcription factor Y subunit B-3 28 144 - -
Vian1g00116 147 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Vian1g00116 147 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Vian1g00116 147 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00116 Vian-Chr1 1065455 1065898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00116 16 136 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.410 1.52e-65 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vian1g00116 CBFD_NFYB_HMF 3.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00116 K08065 - gmx:100305641 211.075