Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00107 ATGGGTGGTGATGAGGCTCGACAATCATTGCTTTCAGAACATTCCAATGAGAAAAATGACCTTCAAAGGAGAAAGCCTAGAGGTGGTGATGTCTTGGAGAAGGAGATCAAGATCAAAGGAGAAAATGATGAACAAAAGCCTTTGAATCCTCAACGTACAGATGTAAAACCACTAGCAGAATTCCATTTCAGGCCAGTGTTGTTATGGTTAGCTGCATACCTAGGGGGAGGAACTATTTGCTTCCTTCTCACACAGGATCAGATAAAGGGCATAAAAACAAATGGGTTTCTTGATGCCATTTACTTCTGTGTTGTAACAATGACAACAGTTGGATATGGAGATCTTGTGCCAGATAGCCAACTGTCAAAACTTCTTGCTTGCATTTACGTCTTCACTGGAATGGCTCTTGTAGGGCTAATTCTTAGCAAGGCAGCAGATTATATTGTTGAAAAGCAGGAAATAATCTTAGTTAAAACCATATTCAAGGGTGAAAATATTGGTCCAGAACAGCTTTCCAAAGAGGTTGAAACCAACAAAGCTAAATACAAACTCATCCTCACAGCATCCATCTTTTTGGTGCTAATGATTGCGGGGACTATTTTTCTCTATTTTATTGAAAATCTAGATTTTGTTGATGCCTTTTATTGTGTTTGTTCCACAGTCACTACTTTAGGTTATGGTGATAAGAGCTTTTCCACCACTTTTGGTCGTGCTTTTGCTGTGTTCTGGATATTGAGCAGCACCATTTGCTTGGCTCAGTCTTTTGCTTATATTGCTGAACATTATACCGAAAAAAGACAAAGGTCCCTTGCAAAAAGGGTTCTTGCACGAAAATTGTCCCACCTTGATCTTGAGGCAGCTGATCTTGATGGAGATCATGTGGTCAGTGCTACAGAGTTCGTTTTGTATAAGCTGAAGGAAATGGGAAAGATCAGCCAAGATGATATTTTAGCTGTTCTGGATATTTTTAGACAACTAGATTTTGATCAATCAGGAACACTGACAGAAGCTGATCTCAGATATAACCCCCTGACTGAAGAGTGA 1044 0.3966 MGGDEARQSLLSEHSNEKNDLQRRKPRGGDVLEKEIKIKGENDEQKPLNPQRTDVKPLAEFHFRPVLLWLAAYLGGGTICFLLTQDQIKGIKTNGFLDAIYFCVVTMTTVGYGDLVPDSQLSKLLACIYVFTGMALVGLILSKAADYIVEKQEIILVKTIFKGENIGPEQLSKEVETNKAKYKLILTASIFLVLMIAGTIFLYFIENLDFVDAFYCVCSTVTTLGYGDKSFSTTFGRAFAVFWILSSTICLAQSFAYIAEHYTEKRQRSLAKRVLARKLSHLDLEAADLDGDHVVSATEFVLYKLKEMGKISQDDILAVLDIFRQLDFDQSGTLTEADLRYNPLTEE 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00107 347 Pfam Ion channel 70 149 IPR013099 -
Vian1g00107 347 Pfam Ion channel 190 260 IPR013099 -
Vian1g00107 347 SUPERFAMILY Voltage-gated potassium channels 60 150 - -
Vian1g00107 347 ProSitePatterns EF-hand calcium-binding domain. 288 300 IPR018247 -
Vian1g00107 347 Gene3D - 166 261 - -
Vian1g00107 347 MobiDBLite consensus disorder prediction 1 51 - -
Vian1g00107 347 FunFam Two-pore potassium channel 1 164 272 - -
Vian1g00107 347 Gene3D - 262 345 - -
Vian1g00107 347 MobiDBLite consensus disorder prediction 10 50 - -
Vian1g00107 347 PRINTS Two pore domain K+ channel signature 105 133 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vian1g00107 347 PRINTS Two pore domain K+ channel signature 222 231 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vian1g00107 347 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 62 316 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vian1g00107 347 FunFam Calcium-activated outward-rectifying potassium channel 1 60 155 - -
Vian1g00107 347 SUPERFAMILY EF-hand 284 341 IPR011992 -
Vian1g00107 347 SUPERFAMILY Voltage-gated potassium channels 177 284 - -
Vian1g00107 347 Gene3D - 55 160 - -
Vian1g00107 347 ProSitePatterns EF-hand calcium-binding domain. 327 339 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00107 Vian-Chr1 994176 995382 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00107 44 339 Ion Channels AT5G55630 56.333 5.99e-120 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00107 K05389 - gmx:100799492 549.666